Gene detail information of Glyur000767s00028530.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 1.00E-17 | F-box family protein |
| NR | XP_004514373.1 | 3.65E-106 | PREDICTED: F-box protein CPR30-like [Cicer arietinum] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 2.00E-19 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|G7LFI2|G7LFI2_MEDTR | 1.00E-103 | F-box protein interaction domain protein {ECO:0000313|EMBL:AET03161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00767 | 70946 | 72175 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.460 |
| SRR1783600 | control | 4.386 |
| SRR1783602 | moderate drought stress | 3.384 |
| SRR1811619 | moderate drought stress | 3.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.032 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.713 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.977 |
| SRR2868004 | Drought Stress (root) | 9.119 |
| SRR2967015 | Control (root) | 9.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.144 |
| SRR9715740 | Leaf | 5.213 |
| SRR9715741 | Leaf | 5.159 |
| SRR9715739 | Root | 6.374 |
| SRR9715742 | Root | 5.783 |
| SRR9715743 | Root | 6.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.294 |
| SRR8749028 | MeJA induced 9h | 3.395 |
| SRR8749029 | MeJA induced 9h | 1.177 |
| SRR8749030 | Uninduced | 1.687 |
| SRR8749031 | Uninduced | 1.078 |
| SRR8749032 | Uninduced | 0.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.240 |
| SRR8400027 | Control - Root | 8.726 |