Gene detail

Gene detail information of Glyur000767s00028521

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16210.1	3.00E-17	F-box family protein
NR	XP_004514373.1	1.77E-105	PREDICTED: F-box protein CPR30-like [Cicer arietinum]
Swissprot	tr\|Q9LU24\|FB145_ARATH	2.00E-18	Putative F-box protein At3g16210
trEMBL	tr\|G7K8D2\|G7K8D2_MEDTR	6.00E-100	F-box protein interaction domain protein {ECO:0000313\|EMBL:AES96484.1}

Sequence

Transcript Sequence

>Glyur000767s00028521.1
AACGAGTGGGGAGTGGGGTTCGCCTTTCAATCTCATGCGGCGATGGTTACAATCGCAAGCAAACCAGGTGAATCTGCGAGGAATGAAGAGGGAAAGGTAAGCAACCAACATCATAATCATAATCATATACCTGATGATCTTGCTTTCTCCATTTTATCAAAATTGCCTCCAAAATCTTTGAAGCGATTTGGATGCCTATGCAAATCATGGGGCCTCTTGTCTGAAAACCCTCATTTCATGAGCATGTTTTGCAACCATTTCTTATCTAGCGATCATCCTTATTACGATGGCACATCTCTCCTCTTACTGTATACTACTAAACCGGCTGTGCAAGGTGAACCGATCCATACCAAGTTGTATTTGCTTTCTAGTGAGAGGTTTGAGAGTAGGGTCAAATTAGATTGGCCACCTCCATATCAAGAGAGAGACGATGATATTGTGATTCACGGTTCTGTTAATGGCACTCTTTGTATTGCGCGAGAACTAAAGGAGAAAAAAATTGTATTGTGGAACCCAGCTACCGAGGAATTCAAGGTCATTCCTCCCAGTGTTATTGAGTCTGTACCTAGCGTTGGGGCCATTCCTTATGGATTTGGTTATGACCATGTTAAAGATGACTATAAGGTGATTCGATTTGTAACTTTTATGGAACTGGAAGAAGGGCCCCCCTTGTGGGAGATATATAGTCTAAGAAGTAACTGTTGGAGGAAACTTGATGCCATTTTGCCTATTTGTGATCCAAGTTTTTTTTACGTCCCAGGAGTGTACATGGATGGAGTACATCATTGGTGGTGTCGGCATAGCACAAATGATGGTGAAGACTGTTTGGCGTCATTTGACTTTAGCAATGAGGTGTTCTTTACAACACCCACTCCCCCAGACATGGATGATATTAGAGCATTCAGCAATTCAACGACGGGTAGTTTTTATTTTGGATGCGTATTTAGAGAGTTGGTGGTGTTAAATGGGTCAATTGCTTTCGTATCATATTATACACCAGAGGCAGAGACAACTACTTTTCACATATCAATCTTGGGTGAATTTGGTGTGAAGGAATCATGGACTAAAGCCTTCATTGTTGGGCCCTTATCTTGCCTTGAATATCCTATCGGAGCGGGGAAGAAGGGCGATATATTCTTCATAAAGAAAGATGAAGCTGCATCAAAGTCTCCAGAACTGCTCATAGAATGCATTGATGGCATTGGAAACATGTTTTTGGAGAAGTTGCAAACGGTATGTAGATTCTGGAAGAAAATTGTGAGAGGTACTTGTGATATTGATGGATACATTATAACCTTGTCACTTCAATGAAGGCTTAAATGATCCACCACAGAATAGCTAACATGTAACTAACTAGTGTCTTACCTTCATGTTGGGTTCTGCAGTTGATTTTGCCTTCGTATGTGTGCTTCTTACTCTTCAATAACTCAAAATTACTACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00767	39451	44004	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000767s00028521.1	PF00646.28	F-box	43	75	0.0007

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.912
SRR1783600	control	0.934
SRR1783602	moderate drought stress	1.839
SRR1811619	moderate drought stress	1.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.153
DRR006520	Root Summer glycyrrhizin high producing strain	5.097
DRR006521	Root Winter glycyrrhizin high producing strain	2.661
DRR006522	Root Winter glycyrrhizin high producing strain	2.505
DRR006523	Root Summer glycyrrhizin low producing strain	6.030
DRR006524	Root Summer glycyrrhizin low producing strain	6.286
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.330

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.669
SRR2868004	Drought Stress (root)	4.265
SRR2967015	Control (root)	6.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.059
SRR9715740	Leaf	0.248
SRR9715741	Leaf	0.000
SRR9715739	Root	0.282
SRR9715742	Root	0.000
SRR9715743	Root	0.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.267
SRR8749028	MeJA induced 9h	5.450
SRR8749029	MeJA induced 9h	2.838
SRR8749030	Uninduced	3.630
SRR8749031	Uninduced	3.098
SRR8749032	Uninduced	1.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.558
SRR8400027	Control - Root	2.561