Gene detail

Gene detail information of Glyur000765s00033298

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	3.00E-78	NB-ARC domain-containing disease resistance protein
NR	KEH25217.1	0	NBS-LRR disease resistance protein [Medicago truncatula]
COG	YP_001208947.1	1.00E-07	leucine rich repeat domain-containing protein [Dichelobacter nodosus VCS1703A]
Swissprot	tr\|Q7XA40\|RGA3_SOLBU	1.00E-113	Putative disease resistance protein RGA3
trEMBL	tr\|A0A072U6A3\|A0A072U6A3_MEDTR	0	NBS-LRR disease resistance protein {ECO:0000313\|EMBL:KEH25217.1}

Sequence

Transcript Sequence

>Glyur000765s00033298.1
CGACAGCACCTGAAATTTTACCAAAGTGGCCGTTTACTCCTGTATATAACGCTTCTTCCCCCATCGATGATCATTCATCAGTCACAAAGTCTGCCACTCACTATTCCCATTACAGCATTACTTTACCATTTTCGTGTTTTTCTCTCTAGTTTCAACTCGAACGATGGCTGTGAATGAGCAGATTCCTTACTGTGTAGTTGAAAGCATCTGGAACAAACTTAATTCACCAGTCTTCCATGAATCGGGGCTGATTAAAGGTGTCGAGTGTGAATTGCAAAGGATTAAGGAACGAATTGGATACCTCAAAGAACCCCTCCTCCAAATGGCGTTAAGACGAGAACAAGAGCCAGGTGTACAACTCTGGACAAAAAGGCTCAAAAATGTTCTTCTTCCTGCTGATGACTTCTTCGATGAAGTTGCCACTGAATATTTGCGACTCAAACGTGATGGTGGCGCTGGGAAGATTGCTTGTGAAATAAAGAGGATAGACAATGAGGTTAACGATGCGCTGGAACAGTTGGATCTATTGAATATGGATATGGATATGACTCGGTTGAATTTAAGCCAAGGACCTGAGAGTGCGCGGCACATAGATTCAGATCTCATTGGCAGAGAAGATGAGAAAATGAAACTTGTGAGACTGTTGACGCAACCGCCGCAAGGTAACGAAATTAATGTTTCCTGGATTGGTATTGTTGGTGTGGGTGGCATAGGTAAAACAGCGGTTGCTCAAATGGTATATTTTCATGAAGATGTCAAGGCGTCCTTTGAAAAGCGAATGTGGGTGCATGCTTCTGGTTATTTTAATGTGAGAGCTGTTGTGAAGAAAATTATAGATCAATTGTTAACTAGTGACAAAAGCGATGGTCCAAAACCAAAGGACTATTTGGTACATAAGCTTCATGAAATTTTAAGTGATAAAAAGTATTTGTTAGTGTTAGACGATATCTGCAACGAGCCTGAAATATTGATTGAACTGAAAAGTATTTTGATGTGTGGGGCTCGTGGTAGTAAGATTATAGTGACCACTCGTAGCGCTGTTGTCGACAAAGTGATGAAAGACAGCTTTTCGCTTCATTTGAAAAGCTTTAGTGAGGAAGATTCATGGAGCTTGTTGAAGAAATTGGTGTTTAGAAATGATGATCAGAACCATATAATGGAACTAGAACCAGTTGGGAAAGAAATAGCAATGAAGTGTAGAGGATCTCCATTGGCAATTAAAACTGTGGCAGACAAATTATCTGGTACATACAAAGAATGTGAATGGATTAAGGTTTTAGAAAGTGACTTTTGGAAACTGGATGGTATCATGTCTGCTCTTAAATTGACTTACCTACGCTTGTCACCCCGATTGAGACAATGTTTTGCTTATTTCCTCGTGTATCCTAAGGATTGGGAAATTGAAAAGAAAGAGTTGGTTCAACTGTGGATGGCACAAGGCTACCTTGAATCTGTATATGATCAGCGGCAAATGGAAGATGAGGGTGATCAGCGGCAAATGGAAGATGAGGGCAATGAATTTGTTGAAACTCTTCGAAAGGAATCATTTTTTCAAGATGCGAAAATTGATGAATATGGTAATCTAGTTAGTTTCAAACTGGATGGTTTGATTCATGATCTTGCATTGGTGGTAGCCGGCAATGATTATTATTACTTGAATTGTGAGAGAAAAGTCAATACACCCATGCACGTGTGCTTCACAGTGGAATCTAACACCATTGATTTGTTGGGTTCATTAGATGCGAGTAGACTGCGAACATTTTTTCTACAGCGGGCAGATAATCGGGAGTTTGCTCAGATTACGGGAGAGTTGTATGTTATTTTAAGATTCAAATGCTTGCGTATCTTGAATCTGTCCCATTCTTCTTTAAAGAAGTTGCCAGATTTTATTGGAAAATTGAAGCATTTGAGATATCTTGACTTATCTTGGTGCGTAAAACTAGCCAGTCTTCCCAAATCGATAGGCAATCTTGTTAACTTACAGACATTGAAGTTGACTGGTTGTGAGACACTTGAATTTTCTACTGAAGTTGTCACAAAGTTGATCAATTTGAGGCACCTTGAGATTCATCGTTGTAAGGCCTTTGAGGACATGATGCCGGCTGGACTGGGGAAACTGTCGTCATTGCAATCCTTATCAAGCTTTCATGTGGTGGCTGCTGATGATCAGAAGAAGAAAGCTGGCAAACTGAATGAATTGCAGAACTTGAATAAGCTAAGTGGCAATTTAGAGATTAGCAGACTCGATCAGGTAAGAGACGTGAGGCTGGAATCACAGGATGTAAATCTGAAAGACAAGAAACTCCTTGTGTCCTTGGACTTAGACTGGGGGAATCAGGAAAAAACAGGGGACAGCTTACAACTATTAGAAAACCTTTGCCCCCACGAATGTCTAAAAAGATTGAACGTGCGGTGGTATCCAGGTGATACGTTTTCTAATTGGCTTTCTTCTATCCAACATCTTTCCTACATCTATCTCTTCGGCTTTCATAACTGCAAGTCTCTCCCACCATTAGAGCATCTCCCATGCCTCAAGTCTCTTGAGATATGTTCTATGAAAGCATTGGAGTACATATGTTCTGATGCGGTGTCTCTGCCGTCTCCAGCAGCATTCTTCCAATCTTTGGAGAGGCTCCAGTTAAGTGGCTGTGAGAAATTCCAGGGATGGAAGAAACTTCAGAACCCGGAGTGGATGGAAGATGCCCCGTTGCCTCTGTTTTGTCGTCTCTCTCAATTAATAATCAACAAGTGCCCAAAGTTGATCCGCTTTCCTGCTTTTCCAAATGTTAAGGAATTGCAATTGCAATCGTGTAATTCTATGGTGATGCCACTGAGAGCAACACTGGACATAGCGACCTCCTCCACTCCTCTTTCCATGCTCAAGTCACTGAAGATAGGAGGCAAACTTCTGGACACCGGAGACTTGCCATCTCATTGGAAAGGAAACCTTACTTCTCTTGAGTATCTTGAAATTGGGGATGTTGAAATATTGGAATACTGGTTTGAGGAAAGCTTCCCTTCTCTGCGGGAAATCGTGATATATGATTGTGATTCACAAGCTTTGCCGGATAAGATGTGTGACTTGCTATCACTTGAGCATATCAAGATACTGGGATGCCACAAATTGGCGTCGCTGCCGGATAGAATGTCTTACCTTATCAACTTAAAGACACTAGAAATCTGGGATTGTCCACTCCTAGTTGAACGATGCCAGAGAGAAACAGGAGCAGATTGGCCCAAGATTTCTAAGATCCAGAGCAGAATATTGAAGAAAAATGAGAGGCGCTAAAGGAGTGTTGCCCAAGTATTCAATTCAGAGTGGTCAGTTGCTAAGTTTCACTTACACAAGGGCACTCACTACATAGTTTCCTTTGGTCTCCAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTTCGCGTCTGGCGCTTACTACAAATCTGTATGATTTCTATAACTATAGACCTAATAAGTCCAAAGTATAGTTTACTGCTGAATGATTTCATTCAGCACCAGTGCACCACCAAAAGCAATCCTGGATCCCCTACCATATCATCACTTTTAGATTCAGAAGTGGAGAGAGAGAGCAATAAAACGCGAAGAGTTCTTACAGAGGATGGATGAAACTAAATCCAAGGAGGAAGAGAAAGTTCAGCTACAAAGGATACCCAAGTTGCAGCAGAGCAGGCCAAGTGGATCACAATCACCAGGCAATCAGATTGGAAAGATCTCACTTACATTGCCGCAATCACCAAAACCAGTGAGGAAAGCAAGTTCTAGTACAGTCCAGAACAAAAAATTGTGAAATTCATGGAAGCCTTCAATCAGTACCAATAAGTCAAAACATATTACAGAAAAAAATTAACTGAACAAGGCAATCAGGAACCTCATTATCAAATACCACATGGGAAAATGCTTCTCCAAATATCCAACATCGAGAATATGAAATTGGGGTACCTGAGGCTGAGACCGTCTTTTGAAGAACATGCTGTCAAAGACAAATAGACTGAAAGATGATACTGTGTTTAGTAGGTTTACTACAAAGAGGATTATTAGGAGGTTTATATGGTGATGATATTCATTAACATCTGTCATTATTATGTTAAATTGTAATGAGG

Protein Sequence

>Glyur000765s00033298.1
MAVNEQIPYCVVESIWNKLNSPVFHESGLIKGVECELQRIKERIGYLKEPLLQMALRREQEPGVQLWTKRLKNVLLPADDFFDEVATEYLRLKRDGGAGKIACEIKRIDNEVNDALEQLDLLNMDMDMTRLNLSQGPESARHIDSDLIGREDEKMKLVRLLTQPPQGNEINVSWIGIVGVGGIGKTAVAQMVYFHEDVKASFEKRMWVHASGYFNVRAVVKKIIDQLLTSDKSDGPKPKDYLVHKLHEILSDKKYLLVLDDICNEPEILIELKSILMCGARGSKIIVTTRSAVVDKVMKDSFSLHLKSFSEEDSWSLLKKLVFRNDDQNHIMELEPVGKEIAMKCRGSPLAIKTVADKLSGTYKECEWIKVLESDFWKLDGIMSALKLTYLRLSPRLRQCFAYFLVYPKDWEIEKKELVQLWMAQGYLESVYDQRQMEDEGDQRQMEDEGNEFVETLRKESFFQDAKIDEYGNLVSFKLDGLIHDLALVVAGNDYYYLNCERKVNTPMHVCFTVESNTIDLLGSLDASRLRTFFLQRADNREFAQITGELYVILRFKCLRILNLSHSSLKKLPDFIGKLKHLRYLDLSWCVKLASLPKSIGNLVNLQTLKLTGCETLEFSTEVVTKLINLRHLEIHRCKAFEDMMPAGLGKLSSLQSLSSFHVVAADDQKKKAGKLNELQNLNKLSGNLEISRLDQVRDVRLESQDVNLKDKKLLVSLDLDWGNQEKTGDSLQLLENLCPHECLKRLNVRWYPGDTFSNWLSSIQHLSYIYLFGFHNCKSLPPLEHLPCLKSLEICSMKALEYICSDAVSLPSPAAFFQSLERLQLSGCEKFQGWKKLQNPEWMEDAPLPLFCRLSQLIINKCPKLIRFPAFPNVKELQLQSCNSMVMPLRATLDIATSSTPLSMLKSLKIGGKLLDTGDLPSHWKGNLTSLEYLEIGDVEILEYWFEESFPSLREIVIYDCDSQALPDKMCDLLSLEHIKILGCHKLASLPDRMSYLINLKTLEIWDCPLLVERCQRETGADWPKISKIQSRILKKNERR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00765	20637	32806	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000765s00033298.1	PF00931.17	NB-ARC	169	430	3.10E-59
Glyur000765s00033298.1	PF13855.1	LRR_8	559	614	7.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.359
SRR1783600	control	6.394
SRR1783602	moderate drought stress	10.901
SRR1811619	moderate drought stress	10.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.681
DRR006520	Root Summer glycyrrhizin high producing strain	26.572
DRR006521	Root Winter glycyrrhizin high producing strain	2.726
DRR006522	Root Winter glycyrrhizin high producing strain	2.752
DRR006523	Root Summer glycyrrhizin low producing strain	13.481
DRR006524	Root Summer glycyrrhizin low producing strain	13.348
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.413

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.878
SRR2868004	Drought Stress (root)	4.208
SRR2967015	Control (root)	3.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.038
SRR9715740	Leaf	6.113
SRR9715741	Leaf	3.805
SRR9715739	Root	2.058
SRR9715742	Root	17.392
SRR9715743	Root	13.613

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.209
SRR8400027	Control - Root	86.996