Gene detail

Gene detail information of Glyur000764s00026028.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01680.1	1.00E-78	myb domain protein 55
NR	XP_007163255.1	0	hypothetical protein PHAVU_001G219000g [Phaseolus vulgaris]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	7.00E-82	Transcription factor MYB86
trEMBL	tr\|V7CYS2\|V7CYS2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35249.1}

Sequence

Transcript Sequence

>Glyur000764s00026028.1
ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAAGGTCTTTGGTCACCCGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTACGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTCTGCAGAGGTGTGGTAAAAGCTGCAGGCTAAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATGCAGTACTCGGGAATAGATGGTCTCAAATTGCGGCACAATTGCCGGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTAAGGCAAAGGGGTATAGACCCTGTGACCCATAAACCACTGTCTGAGGTTGAGACTGGAGAGGAAGACAAAACCAGGAGCCAAGAGAAATCACCAGAAGAAGTATCCAATGAATTGAACCTCCTGAGATCAGAGAGCTCCAAGTCATCAGATGCAGCTTCCTATGAGCACAGAGCATCTTCAATTGCCCCAAAGGCTTATTCATCCGAGAATATGGAAGGTTCTTCCAGCTCCAATAAGATTAACACCAAAAACGACACCACCAACTTGTTAACCAATTGTTGTTCTAGTAAAGACTTGTTCCTAGACAGGTTTATGACTCCCCACCAAGCGAGCTACACCAACACCACTAGTTGCCAGCCCCTAGATTTGATGGGAAATTACCCCCTTCAGATGAGTTATGCATCCACCACTGATAGTCTCCCAACAACCAATTCAAACTCTTGCCATTGGTTCAGCCAAACCGGAAGGCCCTTTGATATGAACTCTGAATTCACTTCTAACGCCATGTCTATTCTTCCACCAACCACCACCTCATTTCTCCCTACTTCTTTTTGCTACAAGCCATCACTTGCTGCTGTCCCCTCACAAGATATTCCCACGGCCTCTTTCTCTGTGAATGGATCCAATTACTGGGAAGCCACTGCCTCCAACAACAGCAACACAAGTAATGGCAGCAGAGAGTTGACAGGTAGTTGCAGCCCTTTAAACATGAAGAACAGTACTATCCTTTCTTCTTGGGGATTGACANATTGTAGTAATTCTACTACTGCTAAAGAGGCTCAAATTCATATGGCAGAAAGCCAGTTAGAAGAAGCCAGGTGGTGTGAGTACCTTCAAAATCCAATGTTAATGATGGCAGCTCTACAAAATCAAGCACCTGAATCTTTATGCAACCAGATGATAAAGCCAGCCACACATTTGGTACCTGATACTTTAGGGGCTATATTGCCTCATTCCTCCAAGCAGCAAGAATCTTCCCAATCTTCTAGTATTTTTTCCAAGGACATCCAGAAGCTAACTGCAGCCTTTGGACATATATAGCAGACTTTGACACAAAAAGAAAGATTTTAGACAAGGGATTTCATTTCAGATTTCTGTTCTTAAATACAGGTATGTGTGTGTGTGAGACCAAATATTTTCGCTCTTGTATATAGATCTGTCACTAAACATTTATTTCTNTTCACCCTCTTCATTTTGGTAGTATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	90154	91930	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026028.1	PF00249.26	Myb_DNA-binding	14	61	9.70E-15
Glyur000764s00026028.1	PF00249.26	Myb_DNA-binding	67	110	2.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.432
SRR1783600	control	2.479
SRR1783602	moderate drought stress	2.785
SRR1811619	moderate drought stress	2.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.500
DRR006520	Root Summer glycyrrhizin high producing strain	4.517
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.069
DRR006523	Root Summer glycyrrhizin low producing strain	2.271
DRR006524	Root Summer glycyrrhizin low producing strain	2.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.342
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.939
SRR2868004	Drought Stress (root)	3.508
SRR2967015	Control (root)	3.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.907
SRR9715740	Leaf	6.791
SRR9715741	Leaf	6.589
SRR9715739	Root	1.573
SRR9715742	Root	6.390
SRR9715743	Root	4.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.157
SRR8749030	Uninduced	0.143
SRR8749031	Uninduced	0.345
SRR8749032	Uninduced	0.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.560
SRR8400027	Control - Root	6.625