Gene detail

Gene detail information of Glyur000764s00026026

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09530.2	5.00E-26	phytochrome interacting factor 3
NR	XP_007163252.1	7.36E-146	hypothetical protein PHAVU_001G218800g [Phaseolus vulgaris]
Swissprot	tr\|Q8L5W8\|PIL1_ARATH	5.00E-34	Transcription factor PIL1
trEMBL	tr\|V7D225\|V7D225_PHAVU	3.00E-146	Uncharacterized protein {ECO:0000313\|EMBL:ESW35246.1}

Sequence

Transcript Sequence

>Glyur000764s00026026.1
GTAACTGTCAAATTTAATTTATTAAGGTACAGAAGCTCGATTGTGTAGCTTAATTTCACATAGTTAACATGCTTGATTCTAGCCGCTCAGGAATGACAAGAAGCTCCTCCCATCCATCCAGCTCCATTTATGGCAAGGATTTCCTTGAGCTGGTATGGGAAAATGGCCCATTTCTTTTAGAAGGAGGATCCTCAAATAGAACACAAAAAACTCCTTTCTGCATCGGGTATCCAATGAACCCTTCACACAATGATGAAGAAGGTGCCAGAACTACAAAAAGAACAAGGTTAAGCACATCNCACTCACTATTGGATCAATTCCCAGCTCAAAGAGACTCTGGCCTCAGCTCTTCACAATCACATCAAAGCAATGGCCAAAGTTCCTATCAGATCAAGATCATGCAATCCTCCCAAAGCAAGAATTCCTATAAGTCTAATGAAGAATTCCCAAACTTAATAAGACCAGTAAAAGACTCTAAGCTCACTGGGGGAGCTCAACATCAACAACAACAACAACAACCCATAACAGCAAGTAATAGTCACATGTGTACATATTCCTCACAACAATGCTTCCCTTCAACTCCATTCAAGAAGCCAAAAATTGATTCAAGCCAAACACCAACAACACCAACAACAAACTCACAGAAACAGTACTTGCAGGGATGTGATGAACAAAGAACGGGTCCGGGAAAGGTGAACTTCTCCAACTTTTTGATACCTGCAGTGTTTCTCAAATCCACTCATAATCATCACCAAAACAGTGCAAGAAATGTTGCANCTTCAGCAAGAGTGGAGGAGATTGAATTCAAAGCAGCAATTAATAATTCCATTAATAGTAGCAAAGCTCTTGATCAATCAGCAGTTATTGAATCATCTAAACAAACCACATCTTTAACTGCTAACAAATGGAACCAAGCATCCCTTGCTGATCAAAGAAGTGTGGAACCACCCCTTGATGATGAGCACTCTGAAGCTGTTGGCCACAACAACAGTGCCCTTGGAACTCACGGATTCCGTGGNCAATGCAATAACCAAACCTCAGCAGCACTTAAAGCAAAGGGAAAAGTTAATGCTAACCTGTGTAATGAACGAGNATCTTCTTCTGTGTACTCTCTTGGAGCCTCAAATGACCCCAATTTTGGTACCAGGAAATATGAGGAAACNGATGACTCTGCATATTTAAGTGATAATGATGAAGAACCAGAAAATACAGTAAAGGAAATGCCAGCTCGTGAGGNTAATAACAGAGTCAAGAGAAGCAGGAACTCCGAAATTCATAATTTATCTGAAAGGAAGCGAAGAGATAAAATCAATGAGAAGATACGCACATTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGATGATGCCATCGACTATCTTAAGACTCTCAAGCTTCAGTTACAGATTATGACAATGGGTAGTGGGCTTTGTATGCCACTTATGATGTTACCTGCAGCAGCACATCACATGAATGCAGCACATCCACATTTACCTCAGTTAATGGGAGCTGGAATGGGGTTCAGGCCAGGCACAGGAATCCCTTGCAACCCACCACAGTTCCCTATTCCACCACTGCCAGGTGTCACTGACAACAGGCTTCAGATGTTTGGTTTCTCCAACCAAATGCCACCAATAATGCCAATTCCCAATGCACCTTTCATTAATCCCATCATTGGAAACTCTTCCACACAACCTCCTCTTATGGCACCTCCTCTTAAGTCTTCTGCCAAGTCAACAACTCTAGATGTCTCAAACCCCAATAATTGATCAGATCTTTGAGAGGCTGAAAATGTAACATAGCAAGCGCGGAATCAGGTTTCCTTTCACCGTAGCACTAGCTATCCCTCTCATTTTCCATCAAAAAAGATGAAATTGGAAAAATGGAAAGGAAAGGAAAACTAGAATGACCAAAGAAAGATTAAAGGCGAGTGTGAAGTTGGTTAACACTTCACAGAAAGGTAGTAATATCTGATTATAGAATATCAGCGGCAGGTTCTGACAGTTCACAGATTGATTTTTTCACTTTGGTATATTGATGTAAAAGATCAGCAGAAGCATAAGTTATACAAATTAATCATCATGGTCTATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	77318	79946	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026026.1	PF00010.21	HLH	403	447	5.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.364
SRR1783600	control	0.419
SRR1783602	moderate drought stress	0.629
SRR1811619	moderate drought stress	0.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.258
DRR006520	Root Summer glycyrrhizin high producing strain	0.288
DRR006521	Root Winter glycyrrhizin high producing strain	0.232
DRR006522	Root Winter glycyrrhizin high producing strain	0.227
DRR006523	Root Summer glycyrrhizin low producing strain	0.312
DRR006524	Root Summer glycyrrhizin low producing strain	0.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.656

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.244
SRR2868004	Drought Stress (root)	6.400
SRR2967015	Control (root)	4.873

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.798
SRR9715740	Leaf	38.462
SRR9715741	Leaf	8.200
SRR9715739	Root	0.000
SRR9715742	Root	0.067
SRR9715743	Root	0.193

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.012
SRR8749028	MeJA induced 9h	1.198
SRR8749029	MeJA induced 9h	1.753
SRR8749030	Uninduced	1.301
SRR8749031	Uninduced	1.883
SRR8749032	Uninduced	0.525

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.436
SRR8400027	Control - Root	0.999