Gene detail information of Glyur000764s00026024 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01700.1 | 3.00E-102 | Chitinase family protein |
| NR | NP_001276174.1 | 3.53E-161 | uncharacterized protein LOC100784196 precursor [Glycine max] |
| COG | YP_003125181.1 | 1.00E-45 | chitinase [Chitinophaga pinensis DSM 2588] |
| Swissprot | tr|Q5NB11|CHI10_ORYSJ | 4.00E-117 | Chitinase 10 (Precursor) |
| trEMBL | tr|C6TNB0|C6TNB0_SOYBN | 1.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00764 | 64454 | 65499 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH19 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000764s00026024.1 | PF00182.14 | Glyco_hydro_19 | 36 | 154 | 1.20E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.958 |
| SRR1783600 | control | 0.997 |
| SRR1783602 | moderate drought stress | 0.321 |
| SRR1811619 | moderate drought stress | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 119.549 |
| SRR2868004 | Drought Stress (root) | 77.555 |
| SRR2967015 | Control (root) | 79.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.059 |
| SRR9715740 | Leaf | 0.243 |
| SRR9715741 | Leaf | 0.517 |
| SRR9715739 | Root | 1.459 |
| SRR9715742 | Root | 2.545 |
| SRR9715743 | Root | 3.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.907 |
| SRR8749028 | MeJA induced 9h | 0.664 |
| SRR8749029 | MeJA induced 9h | 0.815 |
| SRR8749030 | Uninduced | 2.399 |
| SRR8749031 | Uninduced | 1.835 |
| SRR8749032 | Uninduced | 0.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.353 |
| SRR8400027 | Control - Root | 2.863 |