Gene detail

Gene detail information of Glyur000764s00026020.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62120.2	0	Class II aaRS and biotin synthetases superfamily protein
NR	XP_003554576.1	0	PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Glycine max]
COG	YP_003825625.1	9.00E-155	prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
trEMBL	tr\|I1NBI4\|I1NBI4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40930.3}

Sequence

Transcript Sequence

>Glyur000764s00026020.1
AGACTGTGCAGATTGAAANGTCAAAACTCTCGCAAGTAGAATTAAGAAATTAAGAAAAAAGACAAGGGAAGGGACCAAGCAATTTTTATCTGAAAGCGAAAACCCTAGGAGTCTCCCGTTACGCCACAATCGCTCTCGCGCGCTTCACTCTCCTTCAGCTTCTTCGCAACGGGATCAGGTGCTCGTCGTTCAGAATGGCCGGTACTGAAGCCAAAAAAACCAATGCCAAACAATCCGGTGCGAAGAAGAAGGAGGTGAAGAAAGAGACCGGCTTAGGACTCACGAATAAGAAGGCTGAAAACTTCGGAGAGTGGTATTCCGAGGTGGTTGTTAATGCGGAAATGATTGAGTACTATGATATTTCTGGCTGCTATATTCTGAGACCTTGGTCAATGGCAATATGGGAGATCTTGNAAGCGTTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCCGGTGTTTTGCAAAAGGAGAAGGACCATGTTGAAGGTTTTGCTCCAGAGGTTGCTTGGGTGACAAAGTCTGGGGAATCTGAATTAGAAATTCCTATTGCCATTCGTCCAACTAGTGAAACTGTCATGTATCCNTACTACTCTAAGTGGATAAGAGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCAACAAAGGAGGAAGCAGATGCAGAGGTTCTTGAGATATTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGCCGTGGTATACAAGGTGCAACTTCTCACTGTTTGGGCCAAAATTTTGCTAAAATGTTCGAGATAAACTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGTACTCGAACTATTGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGCTACCTCCTAAAGTAGCATCAGTTCAAGTCGTCGTGATTCCTGTGCCTTACAAAGATGCTGATACTCAAGGAATCTTTGANGCCTGTTCTGCAACTGTGAAAACGTTGTGCGAAGCTGGAATTCGTGCTGAGTCAGATGTTAGGGATAACTATTCTCCTGGATGGAAGTATTCTAACTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGAACTGTTCGACGTGATACTGGAACAAAGACGGACATTGCTAATGCTGATTTGGTTGAGGAAGTAAAAAAGTTGCTCGATAATATTCAACAGAATCTGTTTGATGTTGCAAAACAAAAACGAGATGAATGTATTCAGGTCACACATACATGGGATGAGTTTGTACAAGCTTTGAACCAAAGAAAGATGATCTTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAAGCAGATGTCAAGGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCATGTGCTTTGCGTCAGGTAAGCCTGCAAAGAAGTGGNCATACTGGGGCAGAAGTTACTAGATCTTGGTTGTGGTATTTTCCGAGGCTAGTTCAGCATTTAATGGTGCCTTGTCTGGATTTGTTTATTACACAAATATTAGTTTTCTTTTACCTGGTTNACTTATTTTCCAACTGATAGCTTTACTTTGATTTTATATGATACAATATTTATTCAGGTTTAAAATTGTGTATTACATCTGTTGTCCAATTATTGTTGGGGGCATATTGGTTTTTGCGATGATGCTATTATGTAGCATAAAATAACTACTCCATTGAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	35907	41634	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01881	PARS, proS	EC:6.1.1.15	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006433 prolyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004827 proline-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026020.1	PF00587.20	tRNA-synt_2b	71	212	1.60E-17
Glyur000764s00026020.1	PF03129.15	HGTP_anticodon	314	410	8.70E-19
Glyur000764s00026020.1	PF09180.6	ProRS-C_1	437	510	5.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.693
SRR1783600	control	42.860
SRR1783602	moderate drought stress	46.991
SRR1811619	moderate drought stress	46.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.158
DRR006520	Root Summer glycyrrhizin high producing strain	75.906
DRR006521	Root Winter glycyrrhizin high producing strain	61.276
DRR006522	Root Winter glycyrrhizin high producing strain	59.620
DRR006523	Root Summer glycyrrhizin low producing strain	83.643
DRR006524	Root Summer glycyrrhizin low producing strain	83.299
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.710
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.361

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	159.485
SRR2868004	Drought Stress (root)	124.187
SRR2967015	Control (root)	134.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.406
SRR9715740	Leaf	46.367
SRR9715741	Leaf	47.761
SRR9715739	Root	31.653
SRR9715742	Root	67.791
SRR9715743	Root	65.159

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	139.759
SRR8749028	MeJA induced 9h	115.696
SRR8749029	MeJA induced 9h	111.609
SRR8749030	Uninduced	61.963
SRR8749031	Uninduced	51.235
SRR8749032	Uninduced	57.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	121.089
SRR8400027	Control - Root	114.973