Gene detail

Gene detail information of Glyur000764s00026017.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62150.1	0	P-glycoprotein 21
NR	XP_006577182.1	0	PREDICTED: ABC transporter B family member 4-like isoform X4 [Glycine max]
COG	YP_629357.1	3.00E-109	ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprot	tr\|O80725\|AB4B_ARATH	0	ABC transporter B family member 4
trEMBL	tr\|I1JQW9\|I1JQW9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38300.1}

Sequence

Transcript Sequence

>Glyur000764s00026017.1
AAGGAAGGCACTGATAATTCTGATATGAGGCCTGAGAATGGCGAAGCGCATAATAATAAACATGATCATGAGATAATTGAGAGTGAGAGAACCTGCAACACATCAAAGGGGGAAAAGAGAAAACAGAATGAAAAGGGTGAAAGTGTTCCATATCACAGGTTGTTCTCATTTGCAGACTCCAATGACATAGTGTTGATGATTGTTGGCACCATTGGGGCCATTGGAAATGGTTTGGGTATGCCTATCATGGCATTGCTGTTCGGCCAAATGGTTGATAGCTTCGGAAAAAACCAGTTTAGCCCCGACATAGTCAACCAAGTTTCTAAGGTCTCTTTGAAATTTGTATACTTGGGAATAGGCACTGGTGTGGCTGCGTTCCTCCAGGTGGCTTGCTGGATGGTGACAGGGGAGAGACAGGCTGCAAGAATAAGGGGATTGTATTTGAAAACTATACTGAGACAAGATGTTGCTTTCTTTGATAAAGAAACTAANACTGGAGAGGTTATAGGGCGAATGTCAGGTGACACTGTTGGGAAATTTTTGCAGCTAATAGCTACGTTCATTGGGGGCTTTGTCATATCATTTATCAAAGGGTGGCTTCTTACTCTTGTATTGTTGTCCACTCTTCCACTTCTTGTTGCTTCTGGTGCTGTCATGGCCCTTATCATAGGAAGGATGGCATCTCGAGGTCAAAGTGCGTATGCAAAAGCTGCACATGTAGTTGAACAGACAATTGGCTCAATAAAAACCGTTGCATCCTTTACTGGGGAAAAACAAGCAGTATCTAGTTACAGCAAATTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTTTTGTATCCGGAATGGGTCTTGGCATCGTTATGTTAGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGTGCAAAGATGATAATAGAGAAAGGATATGATGGGGGCACGGTGACCAATGTCATTATTGCTGTGTTAAATGCTTCAATGTCTCTTGGCCAGGCCTCTCCTTCCATGAGTGCTTTTGCTGCGGGTCAAGCNGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCTTATGACCCAAGTGGGAAAATATTAGAGGAAATTCATGGTGAAATAGATTTAAGGGGTGTTTATTTCAGTTATCCAGCCAGGCCTGAGGAATTGATATTCAATGGATTCTCTCTACATATACCTAGTGGCACCACTGCTGCTTTAGTAGGACAAAGTGGAAGTGGAAAGTCTACAGTTATCAGTTTGATTGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAATGTGAAAGAGTTTCAGCTTAGGTGGATCAGAGGCAAAATTGGCCTTGTCAGCCAGGAGCCAGCCTTGTTTGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAGTGGAAGAGATAAGAGCTGCTGCTGAACTTGCAAATGCAGCTAAATTCATTGATAAACTGCCACAGGGATTGGACACAACGGTTGGTGAGCATGGAACTCAGCTATCTGGTGGACAGAAACAGCGGATTGCTATTGCAAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTGGATGAAGCTACAAGTGCACTGGATGCAGAGTCTGAGAGGATAGTGCAAGAAGCTCTTGACAGGATCANGGTCAACAGAACTACTGTTGTTGTTGCACATCGCCTGAGCACCGTGAGGAACGCTGATATGATCGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACATGTGGAATTGCTCAAGGATCCTGAGGGAGCTTACACTCAACTCATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAACAGGAGAAAGTACTCAAAACAAGAGTGGACTTTCCTCAGAATCCTTTACACGATTGAGTCAGAGTCAGAGGAGGTCACTTCGAAGATCAGGGTCATCCTTGGGGAATAGTAGCCGCCACTCATTTTCAGTTTCTTTTGGTTTACCCACAAGAGTTAACGACCCAGATGCTGAACATGAAAATTCACAGCCCAAAGAACAATCACCTGAGGTTCCANTCAGACGCCTTGCTTCCCTCAACAAGCCAGAAATCCCAGTGCTTCTGATTGGATGTGTAGCAGGCATTGCAAATGGTACCATATTTCCAATATTTGGCGTGTTGCTTTCCAGTGTCATCAAAACACTTTACGAACCATTTCCTGAGATGAAAAAGGATTCCAAGTTTTGGTCACTAATGTTTGTGACCCTTGGTGTTGCATCTTTAGTGGCAATTCCAGCCCGGGGTTACTTTTTCTCTGTGGCTGGTAATAGGTTGATCCAACGTATCAGGCTGATTTGTTTTGAGAAGGTGATCAACATGGAAGTTGGTTGGTTTGATGAGCCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCACTGGGACTATTGATTCAAAATATAGCAACAGCATTGGCAGGTTTGATTATTGCTTTCATTGCGAGCTGGCAGCTGGCGTTTATTATTCTTGTCTTGGTTCCCCTCATTGGAATGAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGACGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACGGTGGCTTCTTTCTGTGCTGAAGAGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGAAAACAGGTATAAGACAAGGCTTGATCAGTGGAACAGGATTTGGGGTTTCATTTTTCTTACTCTTTAGTGTCTATGCAACCAATTTCTATGCTGGAGCTAGATTTGTAGAAGCTGACAAGGCATCATTCTCTGATGTTTTCCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAATTTCCCAATCAAGCTCCCTAGCTCCTGATTCTAGCAAAGCCAAGACAGCCACTGCTTCCATATTTGAAATAATTGATAGGAAGTCTAAGATAGATCCAAGCGATGAGTCTGGTAGCACATTGGATAGCGTAAAGGGAGAAATAGAGCTTCATCATACTGTGGCTCTTGTTGGAGAAAGTGGAAGTGGGAAATCCACAGTGATAGCCTTGATACAAAGATTTTATGACCCTGATTCTGGTCAAATTACACTTGATGGTATAGGGATTCAGAATTTACAGCTCAAGTGGTTAAGGCAGCAGATGGGACTAGTAAGCCAAGAGCCAGTCTTGTTCAATGACACTATCCGTGCCAATATTGCCTATGGAAAGGATGGCAATGCAACTGAAGCAGAAATCATAACTGCAGCAGAACTGGCCAATGCCCATACGTTTATTAGTGGCTTACAACAGGGTTATGATACAGTAGTTGGAGAAAGGGGAATCCAACTATCTGGTGGGCAGAAACAAAGGGTTGCCATTGCACGTGCCATAATTAAAAGTCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGACGCGGAGTCAGAGAGAGTTGTTCAAGATGCACTAGACAGAGTGATGATGAACAGGACCACAGTGGTCGTGGCACATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGAATTATAGTGGAGAAAGGAAGGCATGAAACGCTCATTAACATTAAGGACGGATTTTATGCTTCCTTAGTCCAACTTCATACAAGTGCTACAACAGTGTGA

Protein Sequence

>Glyur000764s00026017.1
KEGTDNSDMRPENGEAHNNKHDHEIIESERTCNTSKGEKRKQNEKGESVPYHRLFSFADSNDIVLMIVGTIGAIGNGLGMPIMALLFGQMVDSFGKNQFSPDIVNQVSKVSLKFVYLGIGTGVAAFLQVACWMVTGERQAARIRGLYLKTILRQDVAFFDKETXTGEVIGRMSGDTVGKFLQLIATFIGGFVISFIKGWLLTLVLLSTLPLLVASGAVMALIIGRMASRGQSAYAKAAHVVEQTIGSIKTVASFTGEKQAVSSYSKFLADAYKSGVHEGFVSGMGLGIVMLVIFCGYALAVWFGAKMIIEKGYDGGTVTNVIIAVLNASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPSGKILEEIHGEIDLRGVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINVKEFQLRWIRGKIGLVSQEPALFASSIKDNIAYGKEGATVEEIRAAAELANAAKFIDKLPQGLDTTVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIXVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHVELLKDPEGAYTQLIRLQEVNKESEETGESTQNKSGLSSESFTRLSQSQRRSLRRSGSSLGNSSRHSFSVSFGLPTRVNDPDAEHENSQPKEQSPEVPXRRLASLNKPEIPVLLIGCVAGIANGTIFPIFGVLLSSVIKTLYEPFPEMKKDSKFWSLMFVTLGVASLVAIPARGYFFSVAGNRLIQRIRLICFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLIQNIATALAGLIIAFIASWQLAFIILVLVPLIGMNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKTGIRQGLISGTGFGVSFFLLFSVYATNFYAGARFVEADKASFSDVFRVFFALTMAAIGISQSSSLAPDSSKAKTATASIFEIIDRKSKIDPSDESGSTLDSVKGEIELHHTVALVGESGSGKSTVIALIQRFYDPDSGQITLDGIGIQNLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKDGNATEAEIITAAELANAHTFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMMNRTTVVVAHRLSTIKNADVIAVVKNGIIVEKGRHETLINIKDGFYASLVQLHTSATTV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	19220	24759	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026017.1	PF00664.18	ABC_membrane	66	332	1.50E-47
Glyur000764s00026017.1	PF00005.22	ABC_tran	398	546	3.10E-34
Glyur000764s00026017.1	PF00664.18	ABC_membrane	712	983	4.40E-49
Glyur000764s00026017.1	PF00005.22	ABC_tran	1027	1177	9.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.118
SRR1783600	control	0.196
SRR1783602	moderate drought stress	0.540
SRR1811619	moderate drought stress	0.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.439
DRR006520	Root Summer glycyrrhizin high producing strain	0.461
DRR006521	Root Winter glycyrrhizin high producing strain	0.846
DRR006522	Root Winter glycyrrhizin high producing strain	0.979
DRR006523	Root Summer glycyrrhizin low producing strain	0.289
DRR006524	Root Summer glycyrrhizin low producing strain	0.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.378

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.800
SRR2868004	Drought Stress (root)	1.158
SRR2967015	Control (root)	0.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.388
SRR9715740	Leaf	0.157
SRR9715741	Leaf	0.395
SRR9715739	Root	0.013
SRR9715742	Root	0.236
SRR9715743	Root	0.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.821
SRR8749028	MeJA induced 9h	18.248
SRR8749029	MeJA induced 9h	14.104
SRR8749030	Uninduced	26.891
SRR8749031	Uninduced	65.746
SRR8749032	Uninduced	51.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.132
SRR8400027	Control - Root	1.807