Gene detail

Gene detail information of Glyur000764s00026013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01840.1	2.00E-131	Ca2+ activated outward rectifying K+ channel 5
NR	XP_003554573.1	0	PREDICTED: two-pore potassium channel 5-like [Glycine max]
COG	YP_169701.1	2.00E-07	potassium channel protein [Francisella tularensis subsp. tularensis SCHU S4]
Swissprot	tr\|Q9S6Z8\|KCO5_ARATH	5.00E-163	Two-pore potassium channel 5
trEMBL	tr\|I1NBH8\|I1NBH8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40890.1}

Sequence

Transcript Sequence

>Glyur000764s00026013.1
CACACACACAGCAATCTCATCTCGTCTCGTGACTCTCGTCCACTTTCTCTCTCTCTCTCTCACCCGTTTTCGGTTTTTCATTTTTTTTCCTTTTGTTCCCATTCCATGTTCTCTTTCTATCTTTTGTTTTCTGCGATGGAGGATGAACCTTTTCTGGTACTAGAGCGTCGCGATTTACCCTTCACAGCTTCCAAGTCCTACAACGACGTCGTCTCCTTACAAGAATCCCCACTCCCACTCCCACTCGCACGAGAGACAGAGATAACAGAGGCCTCCTCCACCACCGAACAACCACTCTCTCTGCCTCCGATTCTGAAGAAGAAACTGAATCGCTGCAAGACCGCACCCGCCATGGTCATGCGAGACCTCAAACCCAAACCACCCGAAATCCCCAAACCCCAATCCAGTTCCATCATTCGCCAAGCCATTTGGCTTCTCCTCATATACCTCACCGTTGGTGTCACCATTTACTCCTTCAACAGGGACAATTTCTCAGGCATAGAGACTCACCCAGTTGTGGACGCACTTTACTTTTGCATAGTCACCATGTGTACCATAGGTTACGGTGACATAGCCCCTTTAACCCCAGTCACCAAGGTCTTCGCTTGTGTTTTCGTCTTGGTTGGGTTTGGGTTAATAGACATTCTCCTAAGTGGGCTTGTCAATTTCGTCCTCGATTTGCAAGAAAACATGATTTTAACGGGTCTCCAAATGGGTGCTACTGCTAGAGAGGAAGGGTTCTCTGCGAGGGATTACATCGTTGACGTGGCGAAGGGAAGGATGAGGATTAGGTTGAAGGTGTGTTTGGCACTTGGTGTTGTGGTACTCTGTATTGGGGTTGGGAGTTTGGTTCTGTTCTTTGTGGAGGGTTTGGATTGGGTTGATTCAGTTTACTTGTCGGTTATGTCTGTTACGACGGTTGGGTATGGGGACAGAGCCTTCAAGACCCTCCCCGGACGGTTATTCGCTGCTATTTGGTTACTCTTCTCTACGTTGATGGTGGCGAGGGCTTTCCTCTATTTGGCAGAGGCCAGAATTGATAGAAGGCACCGGAGAATGGCTAAGAAGGTTTTGCATAGAGAAATTACTGTTGACGATTTGATTGCTGCAGATATCAACAATACTGGTTTTATCAGTAAGTCAGAGTATGTAATCTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTAATGCNAATTTGTGAGCAATTCAGGAAGCTTGATCCCTCTAACTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGAATGTCATGACAGAATAAAAAGCAAATCAACTGATATATGAGCGTATAATTATAAATTGTTTCAGTACAGGAGCTGGCTAGAGGCAATTATTTTTGCACAAGGAAGAAAATGGAAAACCGGGGATGATAAATCATTTATGCAAAAATTCTGCAAATGTATAGGTCATTTATTTTACCTTAGAGCCCTAGTTAGAGCTAGGTATATGGACCAAGGTCTGTGAGTCTTTTCAGTCAAGTTTGTTTAGACCACAGGTTTAATGAATTTTACCCGTGGGCTTGTAGGTTGGCCNGCAATCACTGAGATTCTCAGTGATTATATTATTCTGAGGAAGATTTTGTACAAAAATTACATCAATTCATAGCGGTGGTTGCAAAGTGCAAACATAAGCATGGAGTTACTAGAGGATAGAAAGAAAGAGACCCACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	355	2818	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005267 potassium channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026013.1	PF07885.11	Ion_trans_2	110	189	7.50E-16
Glyur000764s00026013.1	PF07885.11	Ion_trans_2	239	308	1.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.669
SRR1783600	control	6.484
SRR1783602	moderate drought stress	5.043
SRR1811619	moderate drought stress	5.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.236
DRR006520	Root Summer glycyrrhizin high producing strain	11.386
DRR006521	Root Winter glycyrrhizin high producing strain	1.442
DRR006522	Root Winter glycyrrhizin high producing strain	1.452
DRR006523	Root Summer glycyrrhizin low producing strain	6.282
DRR006524	Root Summer glycyrrhizin low producing strain	6.158
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.833
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.193
SRR2868004	Drought Stress (root)	19.404
SRR2967015	Control (root)	24.404

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.283
SRR9715740	Leaf	10.928
SRR9715741	Leaf	6.077
SRR9715739	Root	3.024
SRR9715742	Root	4.283
SRR9715743	Root	3.359

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.860
SRR8749028	MeJA induced 9h	5.389
SRR8749029	MeJA induced 9h	3.681
SRR8749030	Uninduced	6.963
SRR8749031	Uninduced	12.923
SRR8749032	Uninduced	6.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.198
SRR8400027	Control - Root	11.923