Gene detail information of Glyur000763s00023753


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG00680.12.00E-44photosystem II reaction center protein B
NRAAQ09401.14.36E-52photosystem II cp47 protein [Pachysandra terminalis]
Swissprottr|Q2PMQ9|PSBB_SOYBN1.00E-53Photosystem II CP47 reaction center protein {ECO:0000255|HAMAP-Rule:MF_01495}
trEMBLtr|Q6EYH2|Q6EYH2_9MAGN2.00E-52Photosystem II CP47 reaction center protein {ECO:0000256|RuleBase:RU004535} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold007637988382299-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0009767  photosynthetic electron transport chain

GO:0019684  photosynthesis, light reaction


cellular_component

GO:0009521  photosystem

GO:0016020  membrane


molecular_function

GO:0016168  chlorophyll binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000763s00023753.1PF00421.14PSII1832.70E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.933
SRR1783600control21.370
SRR1783602moderate drought stress20.217
SRR1811619moderate drought stress18.750

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.245
DRR006520Root Summer glycyrrhizin high producing strain8.453
DRR006521Root Winter glycyrrhizin high producing strain4.212
DRR006522Root Winter glycyrrhizin high producing strain1.982
DRR006523Root Summer glycyrrhizin low producing strain8.841
DRR006524Root Summer glycyrrhizin low producing strain10.024
DRR006525Leaf Summer glycyrrhizin high producing strain131.158
DRR006526Leaf Summer glycyrrhizin high producing strain122.231

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)1.588
SRR2868004Drought Stress (root)1.529
SRR2967015Control (root)0.975

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf13.933
SRR9715740Leaf15.868
SRR9715741Leaf17.109
SRR9715739Root3.975
SRR9715742Root2.289
SRR9715743Root2.214

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.378
SRR8749028MeJA induced 9h1.721
SRR8749029MeJA induced 9h0.729
SRR8749030Uninduced0.976
SRR8749031Uninduced1.106
SRR8749032Uninduced0.804

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root1.165
SRR8400027Control - Root1.234

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved