Gene detail

Gene detail information of Glyur000763s00023742

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54890.1	3.00E-104	photosystem I light harvesting complex gene 1
NR	AFK33642.1	2.97E-166	unknown [Lotus japonicus]
Swissprot	tr\|P12360\|CB11_SOLLC	7.00E-146	Chlorophyll a-b binding protein 6A, chloroplastic (Precursor)
trEMBL	tr\|I3S050\|I3S050_LOTJA	1.00E-166	Uncharacterized protein {ECO:0000313\|EMBL:AFK33642.1}

Sequence

Transcript Sequence

>Glyur000763s00023742.1
GATATCCATGAATCATTCCACCTCAACAACCAAACCGGATGGACAAATATCAACGTGGACCAATAACAATTCACACCCTAACATCACTACCCAATAGCAATCCAATTTTGGATTTGCCTATATCCACACCCACTCTCCTATATTCCCCCATTCCCTTATTTCCCACATTTGCAAAACACCATCACTCCATATTCCCACACATTATTCATTATTTCATTTCTCTCATAATAATAATTCAAAGTACCTCTTTGAGAGAGAAATAGAATAATAATGGCTACAAACACATTGATGAGTTCTGCTATCTCAGCTTTCCCATCTCTTCTTTCTTCCTCTAAATCAAGATTTGCAACTGCTGTTCCAATTCCTGCCTGCTTTGGAAGCAATGCCTCTTCTCGCTTCACCATGACTGCTGANTGGATGCCTGGCCAGCCTAGACCCCCTTACCTTGATGGCTCTGCTCCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTCGAGAGATTCAAAGAGTCTGAACTCATCCATTGCAGATGGGCCATGCTCGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGGTTAGGCAATTGGGTAAAAGCACAGGAATGGGCAGCAGTTCCAGGGGGACAAGCAACCTACCTAGGCAACCCTGTTCCATGGGGCACCCTCCCCACCNTTCTGGTCATTGAGTTCCTTTCCATTGCATTCGTGGAGCACCAAAGGAGCATGGAGAAAGACCCTGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCCTTGGGATACTCTAAGGACCCTAAAAAGTTCCATGAATACAAAGTCAAAGAAATTAAGAATGGACGCCTTGCATTGTTGGCTTTTGTGGGGTTCTGTGTTCAACAANCAGCTTATCCTGGCACTGGACCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTCATTATTCCACCATCGGTTTTCCCCAACTAACTGAAAATTAACAATCTTTTCTTGTAATAGCTACTACCTGTAAAACTCCAATGAAAACATTTGTTAATGAATCAGATCTCTCTATGTTGTTGTTCCTCTGTTGTAATTAAAACTTCGAATATTAACAACCCTTTGGTACAAAAAAGCATAGCTTAAAGTGGACTACAAATCAAGTTAATGGTTTCCACTACATTCATATGTAGTAATGATTAAACATTTACATAGGGATCACAAACATTAGATATATTGATGGTTATTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00763	29971	33086	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000763s00023742.1	PF00504.16	Chloroa_b-bind	56	210	2.60E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.030
SRR1811619	moderate drought stress	0.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.237
DRR006520	Root Summer glycyrrhizin high producing strain	0.337
DRR006521	Root Winter glycyrrhizin high producing strain	0.350
DRR006522	Root Winter glycyrrhizin high producing strain	0.341
DRR006523	Root Summer glycyrrhizin low producing strain	0.346
DRR006524	Root Summer glycyrrhizin low producing strain	0.260
DRR006525	Leaf Summer glycyrrhizin high producing strain	1092.455
DRR006526	Leaf Summer glycyrrhizin high producing strain	1088.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.716
SRR2868004	Drought Stress (root)	19.367
SRR2967015	Control (root)	4.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1169.385
SRR9715740	Leaf	1046.145
SRR9715741	Leaf	906.693
SRR9715739	Root	0.234
SRR9715742	Root	0.850
SRR9715743	Root	0.998

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.099
SRR8749028	MeJA induced 9h	3.634
SRR8749029	MeJA induced 9h	1.864
SRR8749030	Uninduced	2.348
SRR8749031	Uninduced	0.120
SRR8749032	Uninduced	5.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.035
SRR8400027	Control - Root	0.650