Gene detail

Gene detail information of Glyur000762s00020838

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63180.1	0	Pectin lyase-like superfamily protein
NR	KHN34377.1	0	Putative pectate lyase 22 [Glycine soja]
COG	YP_003976318.1	3.00E-22	pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprot	tr\|Q93Z25\|PLY22_ARATH	0	Probable pectate lyase 22 (Precursor)
trEMBL	tr\|I1K070\|I1K070_SOYBN	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur000762s00020838.1
ATGGCAAGCACTCCTTTCTCTTTGGTTTTGTTTCTCTTCTCTCTTCTAACGCCAGCCCTCATTTCCTCTTCACCCGTTCAAAACCCTGAATTGGTAGTGCAAGNGGTAAACAGGAAAATCAATGCCTCCATAGCTAGGAGGAACTTGGGGTACCTGTCATGTGGGAGTGGTAACCCCATTGATGATTGCTGGAGGTGTGACCCCAATTGGGAGAAGAACAGGCAAAGGCTAGCGGATTGTGCAATTGGGTTCGGCAAGAACGCCATCGGCGGAAGGAACGGCAAGATTTACGTGGTGGACGACGCCGGCGACGACGACCCGGTGAACCCCAAGCCGGGGACACTCCGGCACGCCGTNATCCAAGACGAACCATTATGGATCATCTTCGCAAGAGACATGGTGATCCAGTTGAAGGAAGAGCTCATCATGAACTCTTTCAAGACCATCGATGGTAGGGGCGCGAGCGTGCACATTGCCGGTGGTCCATGCATCACCATACAGTACGTGACCAATGTCATCATCCATGGGATACACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACCGTATCGGACGGTGATGGTGTGTCCATCTTTGGAGGGAGTCACGTTTGGGTGGACCATTGCTCTTTGTCTAATTGTAACGATGGTTTGATCGATGCCATTCATGGGTCCACCGCTATTACCATCTCCAACAATTACATGACACACCATGATAAGGTCATGTTGTTGGGTCACAGCGACTCTTACACCCAAGATAGGAACATGCAAGTCACAATTGCTTTCAACCACTTTGGTGAAGGCCTCGTTCAAAGGATGCCAAGGTGTAGACTTGGATACTTCCACGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAGTCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCTCCCGATGACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCGCCAGAGAGTGAATGGAAGAACTGGAATTGGAGGTCAGAAGGGGACTTAATGGTAAACGGTGCATTTTTCACTGCATCGGGTGCTGGAGCTTCTTCTAGCTATGCAAGGGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTNGTCAGTTCCATTACATCAGCTGCTGGTACACTTAACTGTAAGAAAGGTACTTCTTGCTGATGATAATGACTGATCGATCAAGCATCTTCTGGTCTGGCGGATCCATTCATATATCTCCGAAACTCAAGGGAAAAAAAAAAATCTATATACATATTCCAAAAGAAAAGGGAGGGAAATTGGAACAAAAAGAAATTAAAAGGCCTATATATATTAATGTGGTCTATCTTTACTTTTCCTTGGATTTCCATGTCCTCCCCTGTTTCTCACTTTTTTAAATTTGTTAGATTGTTTTCTGCTGTTTGTCTTTTCTTTTTTGCTATTTCTCTNATTTGCTCATGATTACAACCTCCACCTGTTACTCTTAGAAACCAAAGATCAGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00762	103918	106741	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
			Quorum sensing	map02024

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000762s00020838.1	PF00544.14	Pec_lyase_C	135	323	1.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	183.894
SRR1783600	control	183.937
SRR1783602	moderate drought stress	29.803
SRR1811619	moderate drought stress	29.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.795
DRR006520	Root Summer glycyrrhizin high producing strain	34.130
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.140
DRR006523	Root Summer glycyrrhizin low producing strain	16.488
DRR006524	Root Summer glycyrrhizin low producing strain	16.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.646
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.423

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	100.275
SRR2868004	Drought Stress (root)	46.535
SRR2967015	Control (root)	58.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.063
SRR9715740	Leaf	1.026
SRR9715741	Leaf	1.418
SRR9715739	Root	48.343
SRR9715742	Root	36.580
SRR9715743	Root	42.334

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.552
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.334
SRR8749030	Uninduced	0.165
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	432.602
SRR8400027	Control - Root	373.432