Gene detail

Gene detail information of Glyur000762s00020836.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48380.1	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2
NR	XP_004501836.1	PREDICTED: probable Ufm1-specific protease-like [Cicer arietinum]
Swissprot	tr\|Q9STL8\|UFSP_ARATH	Probable Ufm1-specific protease
trEMBL	tr\|A0A072V9Y8\|A0A072V9Y8_MEDTR	Ufm1-specific protease {ECO:0000313\|EMBL:KEH34995.1}

Sequence

Transcript Sequence

>Glyur000762s00020836.1
GGTTTGTAAGAGGGGAAATGGCAATCACTCAAATACTTACCACCATTGTTTGTTTTGCTGAATTGATTTGAGAAGAGCAAAGAGAGGAAGCAGGCAGAGGGTTTTGATGGCGGATGATAGCAATCGCAGTGTGAGACTGCTATGCCGCCCAAAGCAGCTCAACAAAGGATCCGACCCGGGAAGCCACCACTGGCTCATCGGATCCCCATTCCTGCCGCCANTGACCATCGTCTCCATCCTCCAATGCATCCACACCACCTCCTCCTCCTCCTCTTCTCCCGATCTACGCAAAGAATCAGAGGACCTTCGCACCTTGATTCCGAGAGGCTTTGAATTAATCGGAGCACTAGCTTCCGGTGACGACACCGCTGCTCGTGCCGCCATCGATGCTGCCCGTGGATTGAGGAAGCTTCTCTACGGCGAGGGAACGGGGGAAGACCAACCGCTGATCGGAGCAGTTTCCGATTCCGGCGAACTGAGGTTTTTTGTGTCGGNGAGTGGAAATGCGACAGGACTCGAACCTGTTACGTCGATCATACAGGAACAACATCCAGAAAAGTGTGTTTGGGAGAATGGTTGCTTGCTTCGTTGTGAGCTTCCGATTAAGTTGCCACTCTATTACCCTCTCAAAAATCCAACTGATGTTGAGAAAGCATATGTACGGGAAACTGAAGCTGTCATTGCCAAGTTAAGAGACCCTCAGGCTGTGTACGTATTAGAAACATTGAATAAAACCTCTACGGATCAACCTCCACCTGCCATAATTCGAGGTGTACAATTAGACTTTCAGACAGACCTCTCCAAGATCAGGCCTTTGGCTAAGAGTGATGATGGCTTTGATGCTAGCTCGCTACCCTGTTCATACTTTTCCATCAACAGTAAAGCAGGCTTGCTAGATTTTTCCATGGAGAATGCAGATACTATCCAAGTGAGTGTTCTCTTTAATAGCTTAGGGCCATCATCAGCATCTGCTGCTCCTATTGCAGAATATCTTCCAGTCCTGGAAGAAGCCAGACTCGTTGTGGCAGATATTAAGCTAGACGTACTTTGCTATTCTTCTAGGGAGCTTCCACTAAGACACGCAGTTTCAAGTTTAATCATCCCTGGCTTAATTGACCAGTTAAATATCCTGCAGAACTTGATGTTGCCTAACCTTTTGGCACAACATCCTCAGCTAAAGTCATTTCACTTTAGTCCTCCTGGGATTCTGCATCCAATAACTGTTTTCTATGAACTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAAGTTAGGAGATCCTTGCACTCAAGACTGGGATTACCTTATGATCGTCCCCTTCTAAGAATTGCTAATGCCTTGGATTTTTCAAAATTGAAAAATAGTGGTACTATCTCTCTACAGAAAGGTTCTTCATTGCTCAGAGANGTACACATTGGAATTCCAAGCAGTGGGGTTACTGGTGGAACTGTTTCCCTTGTTCAAGGTTCCTATGAATACTTTCATTATCTTCAGGATGGTTTTAATGATTCGGGATGGGGTTGTGCTTATCGCTCTCTCCAGACTATCATTTCATGGTTCAGACTCCAAAACTACTCGTCTATAGAAGTTCCTTCTCATAGAGAAATTCAGCAGTCACTTGTTGAGATTGGTGATAAAGATCCTTCTTTTGTTGGGTCACGAGAATGGATTGGTGCCATTGAGTTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACTTGCAAAGTCATCAATGTTAGATCTGGAGCTGAGCTTCCGGAAAAATGTCGAGAGCTAGCATTGCACTTCGAGAAGCAAAGTACACCTGTTATGATTGGTGGTGGTGTACTTGCATATACACTCTTGGGAGTGGATTACAACGAAGCAAGTGGAGATTGCGCATTTTTAATACTTGATCCACACTANACAGGTACGGATGATCTGAAGAAAATAATCAATGGGGGATGGTGTGGGTGGAAAAAGGCCGTTGATAGCAAGGGAAAGAATTTCTTCTTGCATGATAAGTTTTATAATCTACTGCTGCCACAGAGGCCCAACATGGTTTGATAGACTTGGATTTAATGGAGGGACGGCACTGACTCCCATTGGTACCAAATTTCTTGTAATTGTAGGGTAATTTTTCCTAGTTACATGTGATTGGGACTAAAGTGTTCTGTTAATTCATTGCCTCGCTTTTGGGTTAGTGATGTTCTGTACCTTTCTTTGAAGCTTAACTATACGGCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00762	72862	77918	-

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000762s00020836.1	PF07910.8	Peptidase_C78	448	638	4.70E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.487
SRR1783600	control	18.351
SRR1783602	moderate drought stress	17.159
SRR1811619	moderate drought stress	17.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.729
DRR006520	Root Summer glycyrrhizin high producing strain	21.445
DRR006521	Root Winter glycyrrhizin high producing strain	29.833
DRR006522	Root Winter glycyrrhizin high producing strain	28.252
DRR006523	Root Summer glycyrrhizin low producing strain	13.123
DRR006524	Root Summer glycyrrhizin low producing strain	13.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.945

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.492
SRR2868004	Drought Stress (root)	20.912
SRR2967015	Control (root)	25.165

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.407
SRR9715740	Leaf	13.151
SRR9715741	Leaf	13.674
SRR9715739	Root	17.145
SRR9715742	Root	16.324
SRR9715743	Root	17.723

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.930
SRR8749028	MeJA induced 9h	24.350
SRR8749029	MeJA induced 9h	9.951
SRR8749030	Uninduced	13.687
SRR8749031	Uninduced	8.858
SRR8749032	Uninduced	8.471

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.731
SRR8400027	Control - Root	26.053