Gene detail

Gene detail information of Glyur000762s00020833

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48420.1	2.00E-118	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_004501834.1	0	PREDICTED: protein CbbY-like [Cicer arietinum]
COG	YP_004463328.1	2.00E-68	HAD superfamily hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q94K71\|GPPL2_ARATH	3.00E-157	Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420 (Precursor)
trEMBL	tr\|I3SW77\|I3SW77_LOTJA	3.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:AFK44519.1}

Sequence

Transcript Sequence

>Glyur000762s00020833.1
CAACCTAATCAAAACCAGTGTTGGAAGGTGAACACCGTTGGAGTTAACGGTCCCACTCCCACACCGAAGCAGATAAGTGGAAGAAGAGNGTGTGTGTGTGGTATGCAATTAATGCAAGGGATGAGTATGGTGATGGCAGCAGCAAGTAGCATCATCTCCGTTTCCTCTGCTTCATTCTTGAGTCGAACACCAACACAAACACCTCATCCAAAAACACANAGCCTCGTAAAACAAACTAGTCCAACTCCAGCATCATCCTCTTTCACAACACTTGCTGCTCTTAAGATATCATCAGCACCACCAGCAACAACGTTGGGAGTTGGCACAAGGCGTAGTAGGTTGAGTTGCTCAGCTTCAGCTTCAGCGTCTTCCTCCTCTTCCACGGTTCTTCCCTCGGCTCTTCTTTTTGACTGNGATGGAGTCCTCGTAGACACCGAGAAAGATGGCCACCGCATTTCCTTCAATGAAACCTTCCAAGAGAGACAACTAGGCGTTACCTGGGACGTTGACTTGTACGGGGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCGGCAAGTGAACAAGAAAGAAAAGAATTCGTAGCTTCACTNCACAAGCGAAAGACAGAACTGTTCATGGCCCTTATTGAGAAAAAACTGTTGCCACTTCGCCCAGGTGTTGCAAAGCTTATTGACCAGGCCTTATCTCAAGGAGTCAATGTTGCTGTTTGCAGTACTTCAAATGAGAAGGCGGTCTCTGCAATAGTATCATGTTTGCTGGGACCTAAGCGAGCTGAAAAAATCCAGATATTTGCAGGAGATGTGGTTCCCNGCAAAAAGCCCGATCCAGCCATCTATCTACTAGCAGCCAGCACTCTCGGTGTTGAGCCCTCGAGATGTGTTGTGGTGGAGGATAGTGCCATAGGCCTAGCAGCTGCTAAATCAGCTGGGATGAAGTGTATAGTAACGAAGAGCGGCTATACAGCAGATGAAGATTTCTTAAATGCAGATGCGGTATTTGACTTCATTGGGGATCCTCCTGAGGAGAGATTTGATTTGGCATTCTGTGGTAGCCTTCTTGAGAAGCAATACGTCAGCAGCTAGCAAACTGTGAAGTGACTCTCTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00762	61410	64530	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000762s00020833.1	PF13419.1	HAD_2	100	295	1.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.630
SRR1783600	control	5.086
SRR1783602	moderate drought stress	4.732
SRR1811619	moderate drought stress	4.717

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.262
DRR006520	Root Summer glycyrrhizin high producing strain	4.972
DRR006521	Root Winter glycyrrhizin high producing strain	1.835
DRR006522	Root Winter glycyrrhizin high producing strain	1.945
DRR006523	Root Summer glycyrrhizin low producing strain	7.097
DRR006524	Root Summer glycyrrhizin low producing strain	6.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	426.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	412.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.814
SRR2868004	Drought Stress (root)	8.658
SRR2967015	Control (root)	6.517

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	210.853
SRR9715740	Leaf	275.680
SRR9715741	Leaf	189.179
SRR9715739	Root	0.864
SRR9715742	Root	1.592
SRR9715743	Root	0.992

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.484
SRR8749028	MeJA induced 9h	3.601
SRR8749029	MeJA induced 9h	1.928
SRR8749030	Uninduced	0.804
SRR8749031	Uninduced	0.217
SRR8749032	Uninduced	0.606

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.993
SRR8400027	Control - Root	8.012