Gene detail

Gene detail information of Glyur000762s00020832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48425.1	2.00E-121	DNAse I-like superfamily protein
NR	XP_003523126.1	0	PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform X1 [Glycine max]
COG	NP_471228.1	3.00E-32	hypothetical protein lin1894 [Listeria innocua Clip11262]
Swissprot	tr\|Q5XF07\|APEX_ARATH	3.00E-157	DNA-(apurinic or apyrimidinic site) lyase
trEMBL	tr\|I1JXF2\|I1JXF2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G36610.4}

Sequence

Transcript Sequence

>Glyur000762s00020832.1
AAATTTTAAAGGACTAAAAACATAATTAAGCCATTAATTATTAAATGTCAGTCAAAATTCAAATACACTTTTTCTTAATACTACTTAAAAATATTATAACCAAATTTAAAATATCAGTAGCAGCAGCAGCAGCAGGGACTAGTGAGAGTAAGAAGTGAGAACCGAGAAAGAAGGCACGAAAGTGAGTAATTTGGGGGGAAGGGAAGGATCAAAGCAAAGAGGGGAAACAGAGTGAGTGATGAAGCGGTATTTCCAAGCAGTGGAGAAAGGTNCAGATGGTAGTGGGAAGAAGGCGAAAGAGGATAATAATGCAGAGGAAGAAGAAGCGACGAAGAAGGAGCCACTGAAGTTCATGACTTGGAATGCCAACAGCTTATTCCTTCGGGTGAAGAACAACTGGGCCGACTTCACCAACTTGGTCACCACTTTCGACCCTGACGTCATCGCCATTCAAGAAGTTCGAATGCCCGCTGCTGGTGGTTCCAAGGGNTCTCCCAAAAATCAGGCAGATATTAAAGATGACACAAACCCCTCCAGGGAAGAAAAAAAGGATGGAAACATGGCATTTGCTTTGCATCCTATGTTGTCTTCAAAGCATGAACCAGATGGCCGAGTAATCTTAGCTGAATTTGAAACACTTCGTGTATTGAATACATATGTACCAAATAATGGATGGAAAGAGGAGGCAAACTCGTTTCAGAGGAGAAGGAAATGGGACAAAAGGATTCTGGAATTTGTCACACAAAATTCAGACAAGCCTTTGATATGGTGTGGGGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCGGAGTTTTTCAGTGCTGCAAAACTCAATGGTTATGTTCCTCCAAATAAAGAGGATTATGGGCAGCCTGGATTTACCTTGAATGAAAGAAAAAGATTTGGTACCATCTTAAAAGAGGGAAAGCTGGTAGATGCCTATAGATTTCTGCACAAGGATAAGGACATGGAGCGAGGCTTCTCATGGTCTGGAAACCCAGTGGGGAAGTATCGTGGAAAACGTATGAGAATAGACTATTTCATAGTTTCAGAAGAACTTAAAGAAAAGATTGTTGCATGTGAAATGCATGGACAAGGGATAGAGTTACAAGGTTTCTATGGAAGTGATCATTGTCCGGTTACCTTGGAGCTCTCTCCTAGTTCCAATCCAATATAAGAAGTACTTTGCTGNTTATGTTACGAAGCCACTGTTGTCATTTATTTATTTTTCTTATTGATTTCTCTTTTGTCTGGATGCTGAATGTGTCATTAATGAGAAGCTACTTTTCACCGTGTTTATACTGGAATGGACTAGCTGCATACGCACAGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00762	54681	59076	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function
GO:0004518 nuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000762s00020832.1	PF03372.18	Exo_endo_phos	39	301	5.50E-18
Glyur000762s00020832.2	PF03372.18	Exo_endo_phos	39	244	4.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.909
SRR1783600	control	6.359
SRR1783602	moderate drought stress	5.692
SRR1811619	moderate drought stress	5.614

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.681
DRR006520	Root Summer glycyrrhizin high producing strain	11.756
DRR006521	Root Winter glycyrrhizin high producing strain	5.781
DRR006522	Root Winter glycyrrhizin high producing strain	5.626
DRR006523	Root Summer glycyrrhizin low producing strain	13.277
DRR006524	Root Summer glycyrrhizin low producing strain	13.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.297
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.240
SRR2868004	Drought Stress (root)	6.996
SRR2967015	Control (root)	7.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.385
SRR9715740	Leaf	5.130
SRR9715741	Leaf	2.917
SRR9715739	Root	1.017
SRR9715742	Root	3.442
SRR9715743	Root	1.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.240
SRR8749028	MeJA induced 9h	3.298
SRR8749029	MeJA induced 9h	3.346
SRR8749030	Uninduced	1.247
SRR8749031	Uninduced	0.276
SRR8749032	Uninduced	0.550

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.890
SRR8400027	Control - Root	12.434