Gene detail

Gene detail information of Glyur000762s00020831.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48430.1	relative of early flowering 6
NR	XP_004501832.1	PREDICTED: lysine-specific demethylase REF6-like [Cicer arietinum]
Swissprot	tr\|Q9STM3\|REF6_ARATH	Lysine-specific demethylase REF6
trEMBL	tr\|I1JXF4\|I1JXF4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G36620.1}

Sequence

Transcript Sequence

>Glyur000762s00020831.1
GCTGCTACTACTACTACTACTACTAAATTGAGTGTTGTTACTGTTAACCCTTCCCTCCTTGCAATTGCAAGTGTTAGCTTTATTCATTCTTAGCTACCCCTGCTCTGCCCTGCCCTTATTTTTTACATTTATTCACCCCTCTCTGTAGCATTGAAAACAGAGGAAGCAAAGGGGAAAAACAGAACAGAATCACACAAAAGAGAAAAAAGCAGAGAGAAGAAAGTAAAAAAAAAAAAATGCTCACGAATAATGACGGAATCTCACTAATAAGTTGGTAGTGTTGTTGTTCAATGAGAGCAAGCAACAACCACAACCACAAAATCATTTGATTCTGTGGTGTGGTGTGCTGCTATTATTAATGGCGAGTTCAGAGCCAAACGGCGACGTTTTCCCATGGCTGAAATCGATGCCGGTGGCACCAGAGTACAGACCAAGCGAAGCAGAGTTCGAAGATCCAATCAGTTACATTTTCAAGATCGAGAAGGAAGCTTCGAAATACGGCATCTGCAAAATCATCCCTCCNTTCGCACCGTCGCCGAAGAAAACCGCCGTAGCGAACCTAAACCGGTCACTACCAAACGCCACCTTCACGACACGTCAGCAACAGATCGGGTTCTGTCCCCGGAGGCAGAAACCGGTTCAGCGACCGGTTTGGCAGAGCGGAGAACACTACACGTTCCAGGAATTCGAAGCAAAAGCAAAGGCGTTCGAGAAAACTTACCTGAAGAAGCACGGCAATGGTATTAAGAAGTGTGGTGCACTTGAAACGGAGACACTGTTCTGGAAGGCAACGGTGGATAAACCCTTTTCCGTTGAATACGCCAATGACATGCCTGGTTCGGCGTTTTCCGCCGTGAAATGCCGTCACGCCGGTGAGGCTGCTTCTATTGCTCACACTGCTTGGAACATGAGAGGGGTTTCGAGGGCTAATGGTTCTCTGTTGAGGTTTATGAAGGAGGAGATTCCTGGGGTTACTTCACCTATGGTCTATGTTGCTATGCTCTTTAGCTGGTTCGCTTGGCATGTTGAGGATCATGACCTTCATAGCTTGAATTACCTCCACACCGGTGCTGCTAAGACCTGGTACGGTGTCCCTAGGGATGCGGCAGTTGCGTTNGAGGATGTTGTTAGGGTTCATGGCTATGCTGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTCGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCACGGTTTTAATTGCGGAGAGGCAGCGAATATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGAATTAGTGCTGAACCTCGAAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAGCTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACGGAACAATGATCTACTTCATGTACTTGGAAAAGGAACTGCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCTAAATTACGTGTTGGTTGCCAGCAACTAAAAGTGAACCATGGGATCAATGTATGCAATTCTAAGAGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTTAACAGGAACCGTGGAATCAAGCAACAAAATAGTTTCTGTTCTGTGAATGACAAGTTTACTATGTCATGCGAAAGGAACGGGATTTCCTCATTCGATGCAAATAGTAACTCATGCACTTCAAGTTCTAAGCCACTTCAAAGAAACACTGAAAGTGAAACTAGTCAAGGAGATGGATTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAAAGAACCGGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGATTGTTGGGTGGATGAAAAAGAATGCCCAAGATGGTTTTTGTGATATTCCTGTTAAATCTGAGGAGGCTTTAAATACTGAAAGAGGAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATGCAGTTGACGGTCATGAATCAAATATGATAAACTCTACATCAGGAAGATTGCCTTCTAATTGTCAAGATTCCCATGCTAGTCCCATGACTAGACTTGACAGAGATGATATTCCTTCAGAGAGTGTCAGTTCTGATCAATCTTTTGAGAAACAGGATCATGAAACCACTTTAAGGGTTGCATTTAAAAATACAGAGGCAATGCCTTATTCCACCGCTTATAGTTCCCAAGATGCTCATGATGCTGAAAAGTCATTGTCAGCCAAGGCTATGGTTCCTGGCAATAATAAAAATGCTTCATTAGTGCCACAATCTGACGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCCATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGCGGCAGAAGATTTGGGGATTGATTACATGTGGAAGGATATTGCATACAGGCATGCCACCAAGGAGGATGAGGAGAGGATACAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTATTTTATAGTGCAAGTCTTAGTCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTTGTAGTTCTCCAGCAAGCTCACCCATAGAACCAAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTGGAGGATGAGAAAAGCTTATACAAATGGATATTGCCCGATGAGAAACTTGAGAGACCAGAAAGTGACCCCAAAAGTGAAACTACTGTTACAAAATCAGGTAGGAAAAGGAAAATGACTGTAAAGAGTGAGCGAACCAGGAAAGGAAGTTTTGCTGAAAAANATGTGGTTTTGGATAATTCCACTGAAAATAAACCCAATCCTCAGCCAAGGAGGATTCTTAGAAGCAAGCGGGCTAGGCATGTTGAGAGAGATGGTGCAGCTTTGGAAGAGGATTATTCAGCTCCATATCATCATAGAAAACCTATAAGCAAGCAGACAAATTGCACTGAAAGTGATGTGGTTTCTGGTGATTCGCTTGATGATAATCATCACATGCGACGTAGGAATTCTAATGTCAAAAAAGCTAAATTTATTGACAATGATGTGGTCTCAGATAATACAGTGGACTATGGTTCTGATTGGCAGCAGAGGGGAGAACTTAGAAACAAGCAAGTTGAAGATACAGAGAAAGATTCGATTTCAGAGGATTCTTTGGAAGTTGGTTCTATTCAGTTGCACAGGAATACTTCTAGAAGCAAGCATGGCAACTACATTAGTGAAGAAGATGCAATTTCTGATGACCAAATGGAGCACTGTTGTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCGAGGCAAATACCTTGCTGAAGAAGATACAGTGATATCTGACGACCAACTGGAGCTGAACATGCAGAAGCAGCGACAGAGGGATCCTAAAAGTAGGCAAGCCAAATACCTCACTGAAGAGGAAATTATATCAGATGACCAAACAGAGGGCTATTGTCGCAAGTATCAAAGAAGGAGGACTCCTAAAGGAAGGCAAGCCAAATGTGTAGCAGGTGAAGATGTAATGCCTGACGATCAATTGGAGGATCCCTTTCAGAAGCAGCAAACATGTTTTTCTAGGAGAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCAGCAGAGAAGAATTCCTAGGAGCAGGCACAACAAACAGAATGATAAAGAAGTTTTGGATGACTCCGCCGAAAATAGTGCTCATCTGCTNCATAGAACTCCTAAAAGGAAGAAAGCTAAATGTGTGGATGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATTCCCATCAGCAACACAGGAGAACTCTTCAAAGTAAAGAATCCAAACCAAAGACACTTAAACACATGAAACAAGCTAAATCCCTCCAAGTTAAAAACCAGACATCACGGCCTGGAAAACGTGGGGCTCAGATGCTGATGAAATCAAAGGCTCCTCAGCAAGTAAAACAGCCTTCTCATTTGCGGAATAAACAATCTGGTAACTCCAGAGAGTTTAGTTTACATGTGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGGGTCCCAAAAGCTCAGGAGTCTGAAGGAAAATTAAAAGACAAGCAAGCCAAAAGGAAAAAGGTGAAGAAGGATGCTACAGCTGCAAAGGTTTCAGCTGGCAATGCCAAAAAGAAGGATGAGGAAGCACAATACCAATGTGACATTGAGGGATGCACCATGAGTTTTGGGTCAAAACAGGAGCTGTTGCATCACAAGAGAAATATATGTCCCGTAAAAGGCTGCGGGAAAAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGGCGAGTTCATGACGACGACCGACCCCTGAGGTGTCCCTGGAANGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCTCGTACCGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGTATGTGCTGAGCCAGGTTGTGGTCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAANCGAAAGACTGGTCATGCAGTAAAGAAGAGTCGTCAATAGCAAGTGGAATAGATGTTGATTGTTATTACTTAATTTAACATGGTTTTAGAATTTATGGAACCATTGCTTAATTGACCAGGGTAGGAGACTAACAGTTTAGGATATCCCTGCAATTGCCATTTGTAGCAACTATTAATTCTGTTTACTTTGGGTCTTCAACCCATTTGTTCATTACAAAAACAATTTAAAGCAATGGCTTGGATCTGGAAACATGATTCTCATCCAGTTCATGTCACATGCAAATGCTGTTCCAACATTTACGTTTCGTGAATCGTGATGGTGTTGTTGCAATGCACTTCCCCAAC

Protein Sequence

>Glyur000762s00020831.1
MASSEPNGDVFPWLKSMPVAPEYRPSEAEFEDPISYIFKIEKEASKYGICKIIPPFAPSPKKTAVANLNRSLPNATFTTRQQQIGFCPRRQKPVQRPVWQSGEHYTFQEFEAKAKAFEKTYLKKHGNGIKKCGALETETLFWKATVDKPFSVEYANDMPGSAFSAVKCRHAGEAASIAHTAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHTGAAKTWYGVPRDAAVAXEDVVRVHGYAGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGEAVIKELFVQDVLRNNDLLHVLGKGTAVVLLPRSSVDISICSKLRVGCQQLKVNHGINVCNSKRMNSSKGFVSDDLVFNRNRGIKQQNSFCSVNDKFTMSCERNGISSFDANSNSCTSSSKPLQRNTESETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPKEPAARYLMSADCSFFNDWIVGWMKKNAQDGFCDIPVKSEEALNTERGNGNTALALLASAYGNSSDSEEDAVDGHESNMINSTSGRLPSNCQDSHASPMTRLDRDDIPSESVSSDQSFEKQDHETTLRVAFKNTEAMPYSTAYSSQDAHDAEKSLSAKAMVPGNNKNASLVPQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLAAEDLGIDYMWKDIAYRHATKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYYAFGCSSPASSPIEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLYKWILPDEKLERPESDPKSETTVTKSGRKRKMTVKSERTRKGSFAEKXVVLDNSTENKPNPQPRRILRSKRARHVERDGAALEEDYSAPYHHRKPISKQTNCTESDVVSGDSLDDNHHMRRRNSNVKKAKFIDNDVVSDNTVDYGSDWQQRGELRNKQVEDTEKDSISEDSLEVGSIQLHRNTSRSKHGNYISEEDAISDDQMEHCCQKQQRRIPKSRRGKYLAEEDTVISDDQLELNMQKQRQRDPKSRQAKYLTEEEIISDDQTEGYCRKYQRRRTPKGRQAKCVAGEDVMPDDQLEDPFQKQQTCFSRRRQNKGIDREVKNVMSDDQLEDHFQKQQRRIPRSRHNKQNDKEVLDDSAENSAHLLHRTPKRKKAKCVDEDDMNSDDEMEDDSHQQHRRTLQSKESKPKTLKHMKQAKSLQVKNQTSRPGKRGAQMLMKSKAPQQVKQPSHLRNKQSGNSREFSLHVEEEEEGGPSTRLRKRVPKAQESEGKLKDKQAKRKKVKKDATAAKVSAGNAKKKDEEAQYQCDIEGCTMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHDDDRPLRCPWXGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHXRKTGHAVKKSRQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00762	44083	52676	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000762s00020831.1	PF02375.12	JmjN	21	54	4.20E-14
Glyur000762s00020831.1	PF02373.17	JmjC	209	328	1.70E-34
Glyur000762s00020831.1	PF13894.1	zf-C2H2_4	1459	1482	0.037

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.600
SRR1783600	control	5.648
SRR1783602	moderate drought stress	6.113
SRR1811619	moderate drought stress	6.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.336
DRR006520	Root Summer glycyrrhizin high producing strain	6.271
DRR006521	Root Winter glycyrrhizin high producing strain	1.731
DRR006522	Root Winter glycyrrhizin high producing strain	1.675
DRR006523	Root Summer glycyrrhizin low producing strain	7.760
DRR006524	Root Summer glycyrrhizin low producing strain	7.619
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.558

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.335
SRR2868004	Drought Stress (root)	6.629
SRR2967015	Control (root)	7.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.663
SRR9715740	Leaf	5.539
SRR9715741	Leaf	4.445
SRR9715739	Root	0.508
SRR9715742	Root	3.157
SRR9715743	Root	2.706

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.524
SRR8749028	MeJA induced 9h	5.783
SRR8749029	MeJA induced 9h	3.166
SRR8749030	Uninduced	0.603
SRR8749031	Uninduced	0.231
SRR8749032	Uninduced	0.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.814
SRR8400027	Control - Root	6.420