Gene detail information of Glyur000761s00025819 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59980.1 | 5.00E-52 | Nucleic acid-binding, OB-fold-like protein |
| NR | KHN11704.1 | 7.99E-112 | Putative methionine--tRNA ligase [Glycine soja] |
| COG | YP_007713323.1 | 2.00E-20 | Methionyl-tRNA synthetase [Candidatus Methanomethylophilus alvus Mx1201] |
| Swissprot | tr|Q9ZTS1|SYM_ORYSJ | 1.00E-33 | Probable methionine--tRNA ligase |
| trEMBL | tr|I1LNX9|I1LNX9_SOYBN | 7.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00761 | 110897 | 113979 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000761s00025819.1 | PF01588.15 | tRNA_bind | 116 | 211 | 6.70E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.069 |
| SRR1783600 | control | 17.831 |
| SRR1783602 | moderate drought stress | 8.173 |
| SRR1811619 | moderate drought stress | 7.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.716 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.798 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.666 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.950 |
| SRR2868004 | Drought Stress (root) | 7.604 |
| SRR2967015 | Control (root) | 6.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.038 |
| SRR9715740 | Leaf | 18.328 |
| SRR9715741 | Leaf | 12.996 |
| SRR9715739 | Root | 3.514 |
| SRR9715742 | Root | 5.497 |
| SRR9715743 | Root | 5.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.177 |
| SRR8749028 | MeJA induced 9h | 7.105 |
| SRR8749029 | MeJA induced 9h | 9.715 |
| SRR8749030 | Uninduced | 3.526 |
| SRR8749031 | Uninduced | 1.599 |
| SRR8749032 | Uninduced | 3.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.212 |
| SRR8400027 | Control - Root | 8.605 |