Gene detail

Gene detail information of Glyur000761s00025816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63490.1	1.00E-116	Ribosomal protein L1p/L10e family
NR	XP_003534390.1	0	PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Glycine max]
COG	YP_005066741.1	4.00E-95	50S ribosomal protein L1 [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9LY66\|RK1_ARATH	7.00E-156	50S ribosomal protein L1, chloroplastic (Precursor)
trEMBL	tr\|I1L5L1\|I1L5L1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36120.1}

Sequence

Transcript Sequence

>Glyur000761s00025816.1
CATTTTTGGTATTATATATAATAACTGCAGTGGATAGGCAACACAACCTCTCTGTTCTGTTCTCGGCAAGCAACTGTCTTCTACTTCTACTCTCTCAGCAACCATGGCTTCATGTACCGCACCTCCACNATCCCTCATGCTGACGCACCCCACCTCATCAGAACTCTCTCCCTCTCTCCGTTCCTTCGCCCCAATTCCCAACTACCCACTCTCCAGAACCTTCTCCCTCTACCCACTCGTCTTGAAGCCAACCGCCAAGTGTGTCCACGTCAGCTTCTCCCACTCTAGGTCTTCCCATGCCCTCGTCGCTGCTCTCGCCGCCGAGGTCGAGGTTGCCCAAACCGTCGACGAGGACGAGGATGAGGGTGCCGATGATGTTGGGTCCGCCACCGCCACTGTCACCGCTGTAACCACTAAGCCTAAGACAGGGAAAGCTGCATTGCCTCTCAAGAGGGATAGGGTGAGGTCTAAGAGGTTCTTGGAAATTCAAAAATTGAGGGAGATTAAGAGAGAGTATGACTTGAAGACAGCAATAACTTTGGTAAAAGAAACGGCTAAAACCAAGTTTTTAGAAACAGTTGAGGCTCATTTCCGCCTTAATATTGACCCGAAATATAATGATCAACAGTTAAGAGCAACAGTAAATCTACCAAAGGGAACTGGAAAGCCCGTTAAGGTGGCTGTTCTTACTCAAGGTGAAAGATTCGATGAAGCGAAAAATGCAGGGGCTGATTTGGTGGGTGGAGAGGACCTGATAGAACAGATAAAAGGAGGATTCATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTGGGGCCAAGAGGACTGATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTCCTCAGGCTATAGCAGATTTCAAGCAGGGAAAAGTTGAATACAGGGCAGACAAAACTGGAATCGTGCACTTACCCTTCGGAAAAGCCGACTTCCCAGAAGAGGATCTTCTTGTAAACTTGCTTGCTGCAGTAAAATCAGTAGAGGCAAACAAACCTTCGGGTGCTAAAGGTGTGTACTGGAAAAGTGCACANATATGCTCAGCAATGGGGCCTTCAATTAGGTTAAACATCAGGGAGATGCTTGATTACAGGCTTCCATCAGAATAGAGGNACCTGAAAAATGCTTGTTATGATTTAGTCAGCTTTCTGGGGTGCTGCAGTTGTGTAAGATCTTTCCAAATATCTACTGAAAAGATGTTACCAAGATTACATACAGGGGATGAACATGGGATACTTTGGTGGGTTATATCTGTTAAAAAATCTCCACCAACATCATAGTCTTAGACACCCCCAGCTGAGAATTTTACCTTGAATTATTACTTTTGTAACTAACACCGTAGATTTCATCATATTTTCTTTCATGGTAATAAATTTTCATTTTTCACTTTAGATAATGAGGTCTCCTCCTCTTTGGGGTGCTTCAACCGTATGTGTTCCTTGTACTCATTGCAATTGATATGACCCAGTAAAACCATCGAGAGGAATTAGCTTCATGTGTGTTTTGAACTAATGTTCTGATTTCTAATTGACCCTATAAAAATATGTTACATCTTCACAGGTAGCTATAATTATAGCAATATATACAAGAAAATTAGTAACTTCAAACACAGTTTCAGACGCTTCAAATAGTATTTTGGTATAGCGGATACTCCAAATTACAAATATCTCTGCTCTGCGGTTATATAGTCTGCAATTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00761	86142	92970	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0015934 large ribosomal subunit

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000761s00025816.1	PF00687.16	Ribosomal_L1	143	338	8.20E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.458
SRR1783600	control	63.903
SRR1783602	moderate drought stress	83.285
SRR1811619	moderate drought stress	83.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.250
DRR006520	Root Summer glycyrrhizin high producing strain	71.520
DRR006521	Root Winter glycyrrhizin high producing strain	83.103
DRR006522	Root Winter glycyrrhizin high producing strain	81.606
DRR006523	Root Summer glycyrrhizin low producing strain	66.619
DRR006524	Root Summer glycyrrhizin low producing strain	65.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	462.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	461.586

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.528
SRR2868004	Drought Stress (root)	62.707
SRR2967015	Control (root)	65.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	496.849
SRR9715740	Leaf	826.463
SRR9715741	Leaf	532.820
SRR9715739	Root	45.790
SRR9715742	Root	61.821
SRR9715743	Root	54.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.477
SRR8749028	MeJA induced 9h	50.259
SRR8749029	MeJA induced 9h	61.561
SRR8749030	Uninduced	34.220
SRR8749031	Uninduced	23.111
SRR8749032	Uninduced	36.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.431
SRR8400027	Control - Root	64.717