Gene detail

Gene detail information of Glyur000761s00025815

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12470.1	7.00E-118	Protein of unknown function (DUF3411)
NR	XP_003539855.1	0	PREDICTED: uncharacterized protein LOC100818590 [Glycine max]
trEMBL	tr\|I1L5L0\|I1L5L0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36110.1}

Sequence

Transcript Sequence

>Glyur000761s00025815.1
GTATACGGTACGGTGAGGGAGTGATTAATGGGGTCTGGTCACCATGTTTAACACATCCACTTCCCTCCTCTAGTCCTCTCCACACCATCACCTAACTTTTCTTACCTTTCACACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTGTGTGTGTGTGTGCACAGTGCACTCTACAATGGTCATGGCTGCTTCTTTCTCCAACATATCTGCACCTTCCTTCTCTCTACCCACCCAAAACCATAACCGCCACCATTCTTCTCTGCCACTACCAACAAGGTTCACTCCCACCATCACATCTCGCCATCGACATTCCTCTTCCCGTGCTCTTGTTTTCACACCTCCTCCTCAGTTCCTCCACTCTCCGACAACCGCCATTTTCGCGGCCGGTAGAGGCGGCGGAACCGGAGGAGTAGGCGGCGGCGGCGGTGGAGGTGGAGGAGATGGTGAATCTGAGGATAGGGATCGCAACAGAGAGGAGTCGCTGCTGGTTCTGTCGGAGGCCGGCAAGGCGCTGGAGAATTTGCCGGCGGATTTGGCGGAGGCGGTTAGGGCGGGACGGGTGCCGGGTTCGATTGTGAAGAGGTACTTCGAGCTGGAGAAATCGGCCGTGTTCCGGTGGTTGCTCAATTTCGGAGGGTTTAAGGAGAGGTTGCTGGCCGATGATTTGTTCCTCGCCAAGGTTGCCATGGAGTGCGGTGTTGGCATCTTTACAAAGACTGCTGCGGAGTTGGAGAAGCGCAAAGAAAACTTTACTAAGGAGCTTGATTTTGTTTGTGCTGATGTGGTAATGGCCATNGTAGCAGATTTTATGCTTGTGTGGCTTCCTGCTCCCACAGTTTCTCTTCGACCACCACTTGCTGTTAGCGCTGGAACTATCGCTAAATTCTTCTATGGATGCCCTGAAAATGCTTTTCAGGTGGCTTTGGCTGGAACCTCTTATTCACTTATACAGAGAATAGGTGCTATAGTGCGGAATGGAGCAAAGCTATTTGCAGTTGGGACTGGTGCATCACTGATTGGTACTGGGGTAACAAATGCATTGATTAATGCACGAAAAGTTGTTGATAAATCTTTTGCTGATGAGGCTGAGGATGTACCGGTATTATCAACGAGTGTTGCCTATGGGGTTTACATGGCAGTATCTAGCAACTTAAGGTACCAAATTCTAGCTGGAGTTATTGAACAACGGATTCTAGAACCTTTGCTGCACCAGCACAAGCTTATGCTAAGTGCAATTTGCTTTGCTGTTAGAACTGGAAACACTTTCTTGGGCTCACTATTGTGGGTGGATTATGCTCGCTGGGTTGGAGTCCAGAAGATACGGGATTAGGCACAATGGTTTTTTCAGTTACAAGAAATTGTNATGAGAAGATCAATTGGGGTCAAATGTTGTCTGTTGATTCATTACTGGAATTTCGTACTGTTTGGTATGTTGTTGTACATTTTATTCCTCCTGACACCATAATTGTACATTGGGCAATAACGGAGGTCAACAAGCACTACCTGAGTCTTCAATTATTATCACCATACACGGTGGCTTAGTGAAGGCACATGATCAATCTGTTAATAGCTAGCAGGAAGAAGCTGCAGCATGAGATAAAGTAGAGTCACATTTCTGTTACACAACTGTGAGAGAGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00761	73710	78154	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000761s00025815.1	PF11891.3	DUF3411	157	334	7.60E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.455
SRR1783600	control	17.688
SRR1783602	moderate drought stress	19.912
SRR1811619	moderate drought stress	18.865

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.256
DRR006520	Root Summer glycyrrhizin high producing strain	27.461
DRR006521	Root Winter glycyrrhizin high producing strain	6.194
DRR006522	Root Winter glycyrrhizin high producing strain	6.113
DRR006523	Root Summer glycyrrhizin low producing strain	33.578
DRR006524	Root Summer glycyrrhizin low producing strain	33.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	178.331
DRR006526	Leaf Summer glycyrrhizin high producing strain	176.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.546
SRR2868004	Drought Stress (root)	39.549
SRR2967015	Control (root)	41.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	267.063
SRR9715740	Leaf	292.023
SRR9715741	Leaf	284.356
SRR9715739	Root	25.824
SRR9715742	Root	19.803
SRR9715743	Root	21.498

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.502
SRR8749028	MeJA induced 9h	7.522
SRR8749029	MeJA induced 9h	12.108
SRR8749030	Uninduced	1.673
SRR8749031	Uninduced	0.491
SRR8749032	Uninduced	2.683

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.602
SRR8400027	Control - Root	48.704