Gene detail

Gene detail information of Glyur000761s00025814

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G34160.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004515953.1	PREDICTED: pentatricopeptide repeat-containing protein At1g34160-like [Cicer arietinum]
Swissprot	tr\|Q9FX24\|PPR71_ARATH	Pentatricopeptide repeat-containing protein At1g34160
trEMBL	tr\|V7ACZ2\|V7ACZ2_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW03397.1}

Sequence

Transcript Sequence

>Glyur000761s00025814.1
ATGGCCTCACAGATTCACCTGGAATCATTGTTGCAGAAATGCAACTCCCTCATTCNCATGAAGCAGTTCCAAGCCCATCTCATAACCACCGGCAAATTCCAATTCNACCCTACCCGCACAAGGCTCCTCGAGCTCTTCGCCATTTCTCCCGCCGGCGACCTCTCATTCGCCGGAAAGATTTTCCGGCGAATCCAAAACCCCACCACAAACGACTGGAACGCCGTCCTCCGTGGCCTCGCCGGAAGCTCCGAACCAACGCAGGCCATTTCATGGTACCGAACCATGTCACGCAGCGCTCAGAAGATAGACGCTTTAACATGCTCCTTCGCCCTCAAAGGTTGCGCGCGCGCATTGGCCTTTTCCGAAGCGACCCANTTGCATTCTCAGCTTCTGCGTTTTGGGTTCGAAGCTGATGTGTTGTTACTCACTACTTTGTTGGATGTTTACGCGAAAACCGGTTATCTCGATGCTGCACAGAAGGTGTTCGATGAAATGCACAAACGGGATATTGCTTCGTGGAATGCAATGATTTCTGGGTTGGCACAAGGGAGCCTACCCAATGAAGCTATAGCCTTGTTTAACAGGATGAAGGAAGAAGGGTGGAGGCCTAATGACGTNACCGTTCTTGGCGCGCTCTCGGCTTGTTCGCAATTGGGTGCTTTGAAACAAGGTGAGATCATTCATGGGTATGTGGTGGATGAGAAGCTAGACAGGAATGTGATTGTTTGTAATGCGGTTATTGATATGTATGCCAAGTGTGGGTTTGNTGATAAGGCTTATTCAGTCTTTTGTAATATGAGCTGTGGGAAGAGTCTCATCACTTGGAATACAATGATCANGGCGTTCGCGATGAATGGGGATGGAGATAAGGCGCTTGAACTCTTGGATCGAATGGGTATAGAGGGAGTGTGTCAGGATGCGGTGTCGTATCTCGCNGCGTTGTGCGCGTGCAACCATGCTGGCTTGGTGGAAGAAGGGGTTAGGTTGTTTGATTTGATGAAGGGTTCTGGGGTGAGGCCTAATGTGAAGCACTATGGGAGTGTGGTTGATTTGTTGGGTAGGGCAGGGAGGCTCAAGGAGGCATATGGTATTATAAACTCCATGCCCATGTTGCCTGATGTGGTGCTTTGGCAGAGTTTGCTTGGGGCTAGCAAGACTTATGGGGATGTGGAGATGGCGGAGGCAGCGTCGAGGAAGCTAGTGGAGATGGGATCTAACAGTTGTGGGGACTTTGTCTTGCTATCAAATGTTTATGCAGCACAAAAGAGGTGGAATGATGTAGGGAGGGTGAGGGAGGATATGAGGAATAAGGATGTGAAGAAGGTGCCTGGATTTAGTTACACAGAGATAGATGGTAGGATACACAAGTTTATAAATGGTGATCAGAGTCACCCCAATTCCAAAGAGATATATGCAAAGCTGGATGAGATAAAGTTTAGGATTAAAGGGCATGGGTATGTAGCTGAAACTAATCTTGTGTTGCATGATATAGGGGAAGAGGACAAGGAGAATGCCTTACATTACCACAGTGAGAAGTTGGCTGTGGCATATGGTTTGATTAGTACAGTTGATGAGACACCAATTCAGGTTATAAAGAATCTTAGGATATGTGGGGATTGTCATGCTGTGATAAAAATTATATCAAAGATTTATAATAGGGAGATTATTGTAAGGGATCGAGCACGATTCCACAGATTTAAAGGGGGCATATGCTCTTGCNGAGATTATTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00761	71016	72749	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000761s00025814.1	PF13041.1	PPR_2	169	215	5.90E-10
Glyur000761s00025814.1	PF01535.15	PPR	242	266	0.00097
Glyur000761s00025814.1	PF01535.15	PPR	273	302	9.00E-08
Glyur000761s00025814.1	PF01535.15	PPR	308	338	0.0036
Glyur000761s00025814.1	PF01535.15	PPR	345	368	0.077
Glyur000761s00025814.1	PF14432.1	DYW_deaminase	453	567	7.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.665
SRR1783600	control	1.703
SRR1783602	moderate drought stress	1.572
SRR1811619	moderate drought stress	1.568

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.187
DRR006520	Root Summer glycyrrhizin high producing strain	2.164
DRR006521	Root Winter glycyrrhizin high producing strain	1.864
DRR006522	Root Winter glycyrrhizin high producing strain	1.820
DRR006523	Root Summer glycyrrhizin low producing strain	2.100
DRR006524	Root Summer glycyrrhizin low producing strain	2.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.330
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.336

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.726
SRR2868004	Drought Stress (root)	1.817
SRR2967015	Control (root)	1.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.308
SRR9715740	Leaf	0.822
SRR9715741	Leaf	0.339
SRR9715739	Root	0.856
SRR9715742	Root	0.945
SRR9715743	Root	0.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.258
SRR8749028	MeJA induced 9h	1.427
SRR8749029	MeJA induced 9h	2.367
SRR8749030	Uninduced	0.400
SRR8749031	Uninduced	0.309
SRR8749032	Uninduced	0.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.163
SRR8400027	Control - Root	1.969