Gene detail information of Glyur000761s00025808 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63470.1 | 1.00E-169 | serine carboxypeptidase-like 40 |
| NR | CAC19488.1 | 0 | putative serine carboxypeptidase [Pisum sativum] |
| COG | NP_902682.1 | 6.00E-31 | serine carboxypeptidase [Chromobacterium violaceum ATCC 12472] |
| Swissprot | tr|Q0WRX3|SCP40_ARATH | 0 | Serine carboxypeptidase-like 40 (Precursor) |
| trEMBL | tr|Q9FEU4|Q9FEU4_PEA | 0 | Putative serine carboxypeptidase {ECO:0000313|EMBL:CAC19488.1} (Precursor; Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00761 | 43376 | 50869 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000761s00025808.1 | PF00450.17 | Peptidase_S10 | 83 | 489 | 9.70E-138 |
| Glyur000761s00025808.2 | PF00450.17 | Peptidase_S10 | 28 | 263 | 6.50E-55 |
| Glyur000761s00025808.3 | PF00450.17 | Peptidase_S10 | 139 | 230 | 8.30E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.731 |
| SRR1783600 | control | 11.835 |
| SRR1783602 | moderate drought stress | 3.967 |
| SRR1811619 | moderate drought stress | 3.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.943 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.937 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.978 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.850 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 80.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.607 |
| SRR2868004 | Drought Stress (root) | 62.219 |
| SRR2967015 | Control (root) | 45.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.062 |
| SRR9715740 | Leaf | 80.193 |
| SRR9715741 | Leaf | 75.493 |
| SRR9715739 | Root | 3.380 |
| SRR9715742 | Root | 6.751 |
| SRR9715743 | Root | 5.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.376 |
| SRR8749028 | MeJA induced 9h | 0.182 |
| SRR8749029 | MeJA induced 9h | 0.626 |
| SRR8749030 | Uninduced | 0.084 |
| SRR8749031 | Uninduced | 0.142 |
| SRR8749032 | Uninduced | 0.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 50.703 |
| SRR8400027 | Control - Root | 67.701 |