Gene detail information of Glyur000758s00019987 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53590.1 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_004488660.1 | 0 | PREDICTED: C2 domain-containing protein At1g53590-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q93XX4|C2D61_ARATH | 0 | C2 domain-containing protein At1g53590 |
| trEMBL | tr|I1M2S6|I1M2S6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G33580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00758 | 75313 | 80764 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000758s00019987.1 | PF00168.25 | C2 | 273 | 352 | 8.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.934 |
| SRR1783600 | control | 11.141 |
| SRR1783602 | moderate drought stress | 11.843 |
| SRR1811619 | moderate drought stress | 11.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 49.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.422 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 164.577 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 163.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.207 |
| SRR2868004 | Drought Stress (root) | 79.094 |
| SRR2967015 | Control (root) | 67.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 184.270 |
| SRR9715740 | Leaf | 63.015 |
| SRR9715741 | Leaf | 187.803 |
| SRR9715739 | Root | 22.992 |
| SRR9715742 | Root | 200.607 |
| SRR9715743 | Root | 170.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.146 |
| SRR8749028 | MeJA induced 9h | 166.991 |
| SRR8749029 | MeJA induced 9h | 103.517 |
| SRR8749030 | Uninduced | 182.806 |
| SRR8749031 | Uninduced | 66.598 |
| SRR8749032 | Uninduced | 48.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.472 |
| SRR8400027 | Control - Root | 46.499 |