Gene detail

Gene detail information of Glyur000757s00023978.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04230.1	6.00E-11	FBD, F-box and Leucine Rich Repeat domains containing protein
NR	XP_004504897.1	5.41E-107	PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q6NKX3\|FDL14_ARATH	2.00E-11	F-box/FBD/LRR-repeat protein At2g04230
trEMBL	tr\|A0A072UNA8\|A0A072UNA8_MEDTR	9.00E-79	F-box/RNI superfamily protein {ECO:0000313\|EMBL:KEH31187.1}

Sequence

Transcript Sequence

>Glyur000757s00023978.1
ATGTCTAATTCAACGGATGAGATAATGATTCCACCGAAGGCGAAGAGAGGAAGGCATGACGAGAGTGAAGATGAAGAGAACAGAGACAGGCTCAGTGACTTGCCCGATTGCGTTCTCCTTCACGTTTTGTCGTTTTTGAACGCCAAATACGCGATTCGAACTTGCGTTTTGTCGAAAAGATGGAAGCATCTCTGGAAGCGTCTTCCCACCCTTATAATGCTTTCCTCAAGACTTCTCAACTTTGAAGATGGCAGCATTGATCCTCACCTACTGCAAAGGATAGTAAAATATGTTGTTTCACACAATGTCCAGCGATTAGGAATCTCCGTCAACTGTGATATTCAAGACATTCTGCCATGTTTCTCTTCATCTCAGACTCTGACATCTCTTAAGCTTTTCGTTTTCCCAAAAGGCCGTTACAGTTGTGGGAGAACGTTGTTTCCGAAATCTTTGAATTTGCCAGCATTAACCAGCTTGTATCTAGCGAATTTCGCCTTTTGTGCTAGTGACAATGGCTGCGCTGAGCCCTTTTCCACCTTTAATAGGTTGAATAGTTTGATCCTTAACTATTGTTCCGTGAAGGATGCACAAATCCTCTGCATTTCAAAGCTTGCTCATATAAAATCATTGACAGTCAGTGCAAGTACTCTTCAGGTTCTCTCCTTCGTTCCTGATTTATTGAAGGTCAAGCTCCATTACTTGTGTAACTTGAAGACGCTGAAAATAAAAATGGAACCACTTTCATATGGATTAGTCAAGATACTGAGGGCTGCCGAGTTACAGAAAGCAGCTTCCAAGTCATGGAAAGAAGCTGCCAACAACCCACTGCGTCCTTCTTCTCTCTTAGAACCAAGTCGTTTCTCTCCATCTTCCATTGAAGCCATCTGCGTGCTCGTCCTTCCTTGCTGCCGCCGCTGTGCAGACAAGAAATTGATGCAGCAAGTATCATTGAATCCCGTTCACACATTCCACTCCAAGTTCCAACACACTGCAAAGGCGCAAACCTTCGTTCTTGGACCACCAAGAAGAAAAATGACGGATAGTGTAGCTGAAACGTTGCTGTTTACTGTTGTCGGTGGTGGTCGTAGGTGGTTTCGGCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00757	109417	114660	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000757s00023978.1	PF00646.28	F-box	30	68	2.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.279
SRR1783600	control	0.419
SRR1783602	moderate drought stress	0.989
SRR1811619	moderate drought stress	0.798

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.748
DRR006520	Root Summer glycyrrhizin high producing strain	0.675
DRR006521	Root Winter glycyrrhizin high producing strain	0.683
DRR006522	Root Winter glycyrrhizin high producing strain	0.430
DRR006523	Root Summer glycyrrhizin low producing strain	0.442
DRR006524	Root Summer glycyrrhizin low producing strain	0.372
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.622
SRR2868004	Drought Stress (root)	2.000
SRR2967015	Control (root)	2.483

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.102
SRR9715739	Root	0.000
SRR9715742	Root	0.069
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.970
SRR8749028	MeJA induced 9h	2.359
SRR8749029	MeJA induced 9h	0.886
SRR8749030	Uninduced	0.861
SRR8749031	Uninduced	1.160
SRR8749032	Uninduced	0.544

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.435
SRR8400027	Control - Root	0.320