Gene detail

Gene detail information of Glyur000757s00023972.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24470.2	2.00E-66	GATA-type zinc finger protein with TIFY domain
NR	XP_004501661.1	4.77E-127	PREDICTED: GATA transcription factor 25-like [Cicer arietinum]
Swissprot	tr\|Q9LRH6\|GAT25_ARATH	3.00E-80	GATA transcription factor 25
trEMBL	tr\|G7J4K3\|G7J4K3_MEDTR	6.00E-120	GATA transcription factor {ECO:0000313\|EMBL:AES73139.1}

Sequence

Transcript Sequence

>Glyur000757s00023972.1
AAAAGAGAGTATATGGGACACCGTTATTAGGGTTAGTTTCGCCCCATCATTCCGACATTGCTCGCTTCACACCCCGCAAACACATTCTCACACATTTGTTCCTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTACCACAACTAATCAAATCAAGCTCTTACATAGGGTTAGGGTTTCAACTTGTAATGCATCGAAATCCCCGAATTCCACCCCGCTGCCAACAATGTACAACCCTATGAACCAGATCNACGACAACGACGGCGACAACCACATTCATTACGAAGACGGTGGCGNCGGCGCCGGCGCCGGAGGACTCGAAGATGTGGACGACAACGTCTATGTTTCCGGCGCTGGTGGAGGCCCTGACATTCGCTGCGACGATCCTAGCCAGCTCACGCTCTCCTTTCGTGGCCAAGTTTATGTCTTCGATTCCGTTACCCCTGATAAGGTTCAATCGGTGTTGTTACTGTTGGGAGGGTGTGAACTATCTTCAAATTCACAAGGCGTGGAGATGTCGCCTCAGAATCAGAGGAATGCATCGGAATCGGAGTATCCTGCAAAATGTAGTCAACCACAGCGAGCAGCCTCGTTAAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAGGGTCAATTTACATCAACTAAGAAACAAGATGGAAGCTGTTCAGATCAAGAGTCAGCACAGGATGCCGTTCAATTAGAAACCTCATGTACGCATTGTGGAATAAGTTCAAAATCCACCCCAATGATGCGGAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGTACTTTGAGGGATCTTTCCAAGAGACACCATGAACAACACTCTCTTGCGCCGCCTGAGCAGGTTGGTGAGGGGAATGACTTGAACTGTNGGACTGCTCTCCCCGCACATAACGATCTCGTTGATGATAAAACAGCTTTGGTATCCGATCGTTGAGTTTCCCAGTCACAGAAAATGACAGTCATTTGACTGTGGCATTCGTAGGTTTATTGTAATTCCATTCAGTTTGATCGATAGAATGTACAGTTATAGCAAAGCTTTCGTGAATACAAGAGGTCTATTTATATACTCTTGGATTGGTTGCATTCACTGTTTATCTCTGAATGTATAAACTGGAATTTGAATGATGACTTGATTTCANACAGTGGACGCTGGTTTTAGTTTGACATTAATGTGAAAATGTGCACAACAGTAGTATGCAATAGTTCTGGGGGAATATTTTTCATGTTCCCATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00757	67223	71348	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000757s00023972.1	PF06200.9	tify	54	84	6.40E-13
Glyur000757s00023972.1	PF06203.9	CCT	119	162	2.80E-16
Glyur000757s00023972.1	PF00320.22	GATA	184	220	7.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.828
SRR1783600	control	41.972
SRR1783602	moderate drought stress	39.798
SRR1811619	moderate drought stress	38.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.215
DRR006520	Root Summer glycyrrhizin high producing strain	48.163
DRR006521	Root Winter glycyrrhizin high producing strain	20.775
DRR006522	Root Winter glycyrrhizin high producing strain	20.933
DRR006523	Root Summer glycyrrhizin low producing strain	50.484
DRR006524	Root Summer glycyrrhizin low producing strain	50.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.744
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.319
SRR2868004	Drought Stress (root)	42.264
SRR2967015	Control (root)	41.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.993
SRR9715740	Leaf	36.485
SRR9715741	Leaf	31.357
SRR9715739	Root	29.868
SRR9715742	Root	27.835
SRR9715743	Root	27.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.180
SRR8749028	MeJA induced 9h	27.023
SRR8749029	MeJA induced 9h	21.257
SRR8749030	Uninduced	15.194
SRR8749031	Uninduced	9.089
SRR8749032	Uninduced	8.742

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.206
SRR8400027	Control - Root	47.341