Gene detail information of Glyur000757s00023968 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65520.1 | 8.00E-14 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004501659.1 | 1.72E-119 | PREDICTED: uncharacterized protein LOC101488532 [Cicer arietinum] |
| COG | YP_004384779.1 | 2.00E-12 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| trEMBL | tr|G7J4K7|G7J4K7_MEDTR | 1.00E-117 | TPR domain protein {ECO:0000313|EMBL:AES73143.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00757 | 21989 | 22717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000757s00023968.1 | PF13414.1 | TPR_11 | 154 | 207 | 6.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 142.121 |
| SRR1783600 | control | 141.392 |
| SRR1783602 | moderate drought stress | 188.137 |
| SRR1811619 | moderate drought stress | 185.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 76.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.509 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 286.380 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 279.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.772 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.849 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 100.886 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 99.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 108.342 |
| SRR2868004 | Drought Stress (root) | 143.355 |
| SRR2967015 | Control (root) | 154.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 64.746 |
| SRR9715740 | Leaf | 32.812 |
| SRR9715741 | Leaf | 91.385 |
| SRR9715739 | Root | 89.170 |
| SRR9715742 | Root | 133.031 |
| SRR9715743 | Root | 119.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.697 |
| SRR8749028 | MeJA induced 9h | 143.949 |
| SRR8749029 | MeJA induced 9h | 68.248 |
| SRR8749030 | Uninduced | 113.719 |
| SRR8749031 | Uninduced | 76.539 |
| SRR8749032 | Uninduced | 81.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.396 |
| SRR8400027 | Control - Root | 91.917 |