Gene detail

Gene detail information of Glyur000756s00019312

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G09160.2	Protein phosphatase 2C family protein
NR	XP_003554626.1	PREDICTED: probable protein phosphatase 2C 5-like isoform X1 [Glycine max]
Swissprot	tr\|O80492\|P2C05_ARATH	Probable protein phosphatase 2C 5
trEMBL	tr\|I1NBT4\|I1NBT4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41810.1}

Sequence

Transcript Sequence

>Glyur000756s00019312.1
AAAACCAAAAGAGCCTCCTTTTTTGCGCACAGAGAGTATCTCTTTCTACATTTCTCTACCAATCAAATTACAGTCACACACAGAAAACGCTCTCTACTTCTTCTTCTTCTTCTTCTTCTCTATCATCACTACCACTCTCACTCACTGTCTCTCCCTAGGGTTTATCGCCACTCGATCCTAAGCTCTCTTCCTCCAAAATGCTGCTGCTGTCTCCGTAACTTCCACAATCGGAGCTCTGGTGCGCACACTTTCACCGATGTGCAATGTAGGGCTTCTCACTGCAGTCCCAGAGATGTTATGAGTAAGCGTGAATTGTCAAGGATGAAGTCACCGCCGGTTCCGTTGGCGACTCTGATTGGCCGTGAGCTTCGGAATGATAAAGTTGAAAAACCTTTCGTGAAGTACGGGCAAGCTGGCTTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCACAGGGTTCCCGGGGATCCATCCACTGTGTTTTCTGTCTTTGCGATTTTTGATGGGCATAACGGTATATCGGCTGCTATCTTTGCAAAGGAAAACTTGCTAACTAATGTTTTGAGTGCAATACCGCAAGGTATCAGCAGGGATGCATGGCTTCAGGCCCTTCCTCGTGCTCTAGTTGTTGGTTTTGTGAAAACTGACACAGAGTTGCAGCAGAAGGGGGAAACTTCTGGAACAACAGCTACATTTGTTGTGGTCGATGGATGGACTGTCACTGTTGCCTCTGTTGGGGATTCTCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGATCACAGACTGGAAGAGAATGCAGAAGAGAGGGAGCGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTTAATATATTTGGGGGCAATGAGGTAGGTCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTATCTAGATCAATAGGTGACACAGATGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAACTTTCAAATGCTGGTGGAAGGCTTATTATAGCCTCTGACGGAATTTGGGATGCTTTATCTTCTGACACGGCTGCCAAGTCATGCCGGGGTCTACCTGCAGAGCTTGCTGCAAAGCTAGTGGTCAAGGAAGCTCTAAGATCTAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCTCCCTGTATTACCACCAACCCCAAGGAAGAAACATAATATGCTAACTGCGTTTCTCTTTGGAAAGAAATCTGAAAACTCTGCAAACAAAGCTACTAGTAAGCTTTCTTCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTTCAGAAAGGCTTGGTAAGGATTTTCCGTTTAGTAAGAATTCAGGGATTTTCCGCTGTGCGGTTTGCCAAGTGGATCAACCCCCCGGCGATGGTCTATCAGTGAACTCTGGACCTTTCTTTTCCCCAGCATCTAACCCATGGGAAGGCCCATTTCTATGCACAAACTGTCGGAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCCAGCAGNCCTACCATCACAGCATAGTAATTATCTAGTATTATAGTTTCATAGTAAATATTTGTATTTTTTTTTTCTGGCAGTGTGAGCATCCTTGATTTTACATTTTCGGTGGTGATTATCATAGATGTGTAAGAAATGAGGTTAAGATAGGTCTAGTATGTGTTTTGGAGGTTGCTACAAGTTTGATTCTGGCTTGTGCTCAGCTGTTGGACTGACTGAGAGAACAAACGTGTTGTCTAGTAGATAAGTGGTATGTGCTAACGGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00756	93312	96560	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000756s00019312.1	PF00481.16	PP2C	165	380	2.00E-35
Glyur000756s00019312.2	PF00481.16	PP2C	165	364	5.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.469
SRR1783600	control	49.429
SRR1783602	moderate drought stress	45.226
SRR1811619	moderate drought stress	44.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.195
DRR006520	Root Summer glycyrrhizin high producing strain	59.628
DRR006521	Root Winter glycyrrhizin high producing strain	1.338
DRR006522	Root Winter glycyrrhizin high producing strain	1.346
DRR006523	Root Summer glycyrrhizin low producing strain	57.483
DRR006524	Root Summer glycyrrhizin low producing strain	56.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.073
SRR2868004	Drought Stress (root)	31.158
SRR2967015	Control (root)	33.417

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.383
SRR9715740	Leaf	19.794
SRR9715741	Leaf	15.838
SRR9715739	Root	54.836
SRR9715742	Root	37.730
SRR9715743	Root	43.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.789
SRR8749028	MeJA induced 9h	9.294
SRR8749029	MeJA induced 9h	7.378
SRR8749030	Uninduced	2.503
SRR8749031	Uninduced	0.434
SRR8749032	Uninduced	1.425

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.010
SRR8400027	Control - Root	66.219