Gene detail

Gene detail information of Glyur000756s00019309

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51800.3	3.00E-159	metallopeptidase M24 family protein
NR	ABF66654.1	0	EBP1 [Ammopiptanthus mongolicus]
COG	NP_988564.1	5.00E-23	methionine aminopeptidase [Methanococcus maripaludis S2]
Swissprot	tr\|Q56Y85\|MAP22_ARATH	3.00E-24	Methionine aminopeptidase 2B {ECO:0000255\|HAMAP-Rule:MF_03175}
trEMBL	tr\|A0EVX1\|A0EVX1_9FABA	0	EBP1 {ECO:0000313\|EMBL:ABF66654.1}

Sequence

Transcript Sequence

>Glyur000756s00019309.1
CTTGGCCATCACACACCCTTTAGCTCCCCACTACAGCCTCCTCTTTGGCATATAACCCCTTTGCTCCTCACTGGTTCATCCACACTGTTATCNCATTCAACTCTGCACTAAGTCACAGGGATTTTCATTAGGTGAGGTNACCATGTCGGATGATGAAAGGGAGGAGAAGGAGTTGGATCTCTCTTCTTCTGAAGTTGTCACCAAATACAAAACCGCAGCTGAGATNGTTAACAAGGCTTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCTAAGATTGTGGACATTTGCGAGAAAGGNGATTCATATATTAGAGAGCAAACTGGTAATGTGTACAAGAATGTAAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCCACTTGCATATCGGTAAACAACACAGTCTGCCATTTCTCTCCTCTAGCCAGTGATGAGACAGTGATGGAAGAAGGTGATATATTGAAAATTGATATGGCTTGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACTCATGTTCTTCAGGAAGGTCCTGTTACTGGACGTGCAGCTGATGTCATAGCTGCTGCAAACACTGCTGCTGAGGTGGCCTTGAGGCTTGTAAGGCCAGGAAAGAAGGTAATCAATTTAACATATTGGTTTCCTCTTTTCCCTGTTGCCAAAAGTAAAATGGCTGAACATAGTTTCATGGATGTGCTGATTTATATAAACAAGGACGTAACTGATGCAATTCAAAAGGTTGCTGCTGCCTATGATTGTAAAATTGTTGAGGGAGTTCTAAGCCACCAAATGAAGCAATNTGTAATTGATGGGAACAAGGTTGTGCTTAGTATGTCTAATCCAGAAACAAGGGTTGATGAAGCCGAGTTTGAGGAAAATGAAGTTTACGCAATTGATATAGTAACAAGCNCTGGAGAAGGCAAGCCTAAGCTGTTGGATGAAAAGCAGACAACCATTTATAAGAGGGCTGTTGACAGGAGTTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAACCAAAACTTTCCAATCATGCCATTTTCTGCAAGGGNTTTGGAAGAGAAAAGAGCTCGNCTGGGTTTAGTGGAGTGTGTGAATCATGAGCTCTTGCAGCCGTATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACACATCAAATTCACAGTCTTGCTAATGCCAAATGGATCGGATCGCGTTACATCTCATCCACTCCAAGATTTGCAGCCCACTAAAACTGTAGATGATCCTGAGATTAAAGCCTGGCTAGCCTTGGGCACAAAGACAAAGAAGAAGGGTGGTGGAAAGAAGAAAAAAGGTAAGAAAGGTGACAAGGCTGATGAGTCAGTTGAAGCTGAGACGGTGGATTCAACTAATGGGGCCACACCTCAAGATTAAGTCAAGACCCTCTCCCCAATCCCCCAAGAAAATGAAATGCTTCTCTTTTCATTTTTGACAATCCTTTCAATTTTGGTACATTGTTCACCACATTGTATCTGCTTGGATATGAATTAATTATAGTGTTTAGACATCGATTGTAATAGCAGCAATTTTCATGTGCACATTTTGGTCCCAAATATCAACAAAAAAACAACAGGAAAATTTTCTGTTTGGAAAATTGTTTTTTGGTTATTAGCTTTTAAAATGGCGTGTTCTCTATANTCTCACTCTAGTGGCATCTAGTGGCATGTATGTAAATCAAAAGAGGTTATTACCCATTTAGATGTGTCTGGCTATTGTCATCCCTACTAGGGGTGAGCATGGGCCGGTTTGGATTAGATTTATCTAAATTTGTTATCTAAATCGATCAAAAGAGGANGGGTTGGATTGGATTGGATTTTGTCTTTTTTTTAATCAAATTCAAACCAAATCAATTCGATCAACAACGGGTTATATTGAATTGGGCTAATTGGGGTCAGACAATTGTTGCTTAAAAAAATTCTGAAAAATTGAAAAGAAACAAAAAAGGGAAAAAAATGAAGATGGGCCTAGCCCAAACGAGAAGAAGTAAAAAAAGGGGAATTGGTAAATACACCAATATTTTTGGACATACACCCCACATTTAAAAAGAAAAATACCATTATACCCTCATTGATTTGTTTATTTTTTTTTTCAATTTTGAGTTGTTACCGGAAACTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00756	68651	73423	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000756s00019309.1	PF00557.19	Peptidase_M24	21	254	2.10E-25
Glyur000756s00019309.2	PF00557.19	Peptidase_M24	21	224	5.60E-31
Glyur000756s00019309.3	PF00557.19	Peptidase_M24	21	224	3.00E-31
Glyur000756s00019309.4	PF00557.19	Peptidase_M24	21	224	5.60E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.790
SRR1783600	control	51.294
SRR1783602	moderate drought stress	35.830
SRR1811619	moderate drought stress	35.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.598
DRR006520	Root Summer glycyrrhizin high producing strain	63.026
DRR006521	Root Winter glycyrrhizin high producing strain	45.157
DRR006522	Root Winter glycyrrhizin high producing strain	42.570
DRR006523	Root Summer glycyrrhizin low producing strain	50.337
DRR006524	Root Summer glycyrrhizin low producing strain	49.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.858
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.150

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.715
SRR2868004	Drought Stress (root)	68.016
SRR2967015	Control (root)	65.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.410
SRR9715740	Leaf	45.107
SRR9715741	Leaf	32.132
SRR9715739	Root	7.782
SRR9715742	Root	28.571
SRR9715743	Root	23.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	132.780
SRR8749028	MeJA induced 9h	60.011
SRR8749029	MeJA induced 9h	85.022
SRR8749030	Uninduced	12.439
SRR8749031	Uninduced	7.147
SRR8749032	Uninduced	10.555

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	72.186
SRR8400027	Control - Root	63.490