Gene detail

Gene detail information of Glyur000756s00019308

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51800.3	7.00E-164	metallopeptidase M24 family protein
NR	ABF66654.1	0	EBP1 [Ammopiptanthus mongolicus]
COG	YP_003893792.1	6.00E-29	methionine aminopeptidase [Methanoplanus petrolearius DSM 11571]
Swissprot	tr\|Q56Y85\|MAP22_ARATH	3.00E-28	Methionine aminopeptidase 2B {ECO:0000255\|HAMAP-Rule:MF_03175}
trEMBL	tr\|A0EVX1\|A0EVX1_9FABA	0	EBP1 {ECO:0000313\|EMBL:ABF66654.1}

Sequence

Transcript Sequence

>Glyur000756s00019308.1
GGGGGAAAAACCCTACGCCAAAGTTTATACTATAACGAAAATGAAAAATCCTATATAAACCAAAGCTGCGTCTGTGTCGTATAACCCTAGTTGCACTTAGCCATCACACGCCCTTTTGCTCCACACNACTGCCCTTTCCTCCTAACTGCTCCATCTACACTGTCATCATACTNAACTCTGCACTAAGTCACAGGGATTTTCAATAGGTGAGGTTACCATGTCGGATGATGAAAGGGAGGAGAAGGAGTTGGATCTCTCTTCTTCTGAAGTTGTCACCAAATACAAAACCGCAGCTGAGATCGTTAACAAGGCTGTGAAGCTAGTTATCCAAGAATGTAAACCGAAGGCTAAGATTGTGGACATTTGCGANAAAGGAGATTCATATATTAGAGATCAAACTAGTAATGTGTACAAGAATGTGAAGAAGAAGATTGAGAGAGGTGTTGCTTTCCCAACTTGCATATCTGTAAACAACACAGTCTGCCATTTCTCTCCTCTAGCCAGTGATGAGACAGTGATGGAAGAAGGTGATATATTGAAAATTGATATGGCATGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACTCATNTTCTTCAGGAAGGTCCNGTTACTGGACGTGCAGCTGATGTTATAGCTGCTGCAAACACTGCTGCTGAGGTGGCCTTGAGGCTTGTAAGGCCAGGAAAGAAGAACAAGGATGTAACTGATGCAATTCAAAAGGTTGCTGCTGCCTATGATTGTAAAATTGTTGAGGGAGTTCTAAGCCACCAAATGAAGCAATTTGTAATTGATGGGAATAAGGTTGTGCTTAGTATGTCTAATCCAGAAACAAGGGTTGATGAAGCCGAGTTTGAGGAAAATGAAGTTTATGCAATTGATATAGTAACAAGCTCTGGAGAAGGCAAGCCTAAGCTTCTGGATGAGAAGCAGACAACCATTTATAAGAGGGCTGTTGACAGGAGTTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAACCAAAAATTTCCAATCATGCCATTCTCTGCTAGGGCTTTAGAAGAGAAAAGAGCTCGCCTGGGTTTAGTGGAATGTGTGAATCATGAACTCTTGCAGCCATATCCTGTTCTGCATGAAAAGCCTGGTGATTATGTTGCACACATCAAATTCACAGTCTTGCTAATGCCAAATGGATCGGATCGNGTTACATCTCATCCACTCCAAGAATTGCAGCCCACTAAAACAGTAGATGATCCTGAGATTAAAGCCTGGCTAGCCTTGGGCACAAAGACAAAGAAGAAAGGTGGTGGAAAGAAGAAAAAGGGTAAGAAAGGTGACAAGGCTGATGAGTCAGCTGAAGCTGAGACGATGGATTCAACTAATGGGGCCACACCTCAAGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00756	62609	66528	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000756s00019308.1	PF00557.19	Peptidase_M24	21	224	5.20E-30
Glyur000756s00019308.2	PF00557.19	Peptidase_M24	21	224	3.40E-30
Glyur000756s00019308.3	PF00557.19	Peptidase_M24	21	224	5.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.925
SRR1783600	control	70.376
SRR1783602	moderate drought stress	46.014
SRR1811619	moderate drought stress	46.520

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	96.767
DRR006520	Root Summer glycyrrhizin high producing strain	96.588
DRR006521	Root Winter glycyrrhizin high producing strain	49.759
DRR006522	Root Winter glycyrrhizin high producing strain	48.718
DRR006523	Root Summer glycyrrhizin low producing strain	62.799
DRR006524	Root Summer glycyrrhizin low producing strain	64.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.026

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	113.349
SRR2868004	Drought Stress (root)	76.390
SRR2967015	Control (root)	70.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.850
SRR9715740	Leaf	44.486
SRR9715741	Leaf	37.150
SRR9715739	Root	7.616
SRR9715742	Root	48.855
SRR9715743	Root	41.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	175.594
SRR8749028	MeJA induced 9h	89.298
SRR8749029	MeJA induced 9h	137.395
SRR8749030	Uninduced	27.603
SRR8749031	Uninduced	22.657
SRR8749032	Uninduced	20.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.933
SRR8400027	Control - Root	76.173