Gene detail

Gene detail information of Glyur000756s00019301

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	1.00E-130	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_004492464.1	0	PREDICTED: TMV resistance protein N-like isoform X3 [Cicer arietinum]
COG	NP_522403.1	6.00E-12	hypothetical protein RS05354 [Ralstonia solanacearum GMI1000]
Swissprot	tr\|Q40392\|TMVRN_NICGU	2.00E-124	TMV resistance protein N
trEMBL	tr\|A0A072UBH9\|A0A072UBH9_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH23205.1}

Sequence

Transcript Sequence

>Glyur000756s00019301.1
ATGCCTAAGCGACCATTTCAGGCCCTGTTGGGCGGGGAAGGTGACAACAGCCTCCAGTTCTTCCGTTTGGACTCCCGCAATACCTTTGTTGACCATCTCTATACTCATCTCATTAGAACAGGTATTTTTACCTTCAAGGATGTTACACAGCTCCAGAAAGGAGAATCCATTTCCCCCCAACTTCTACAAGCAATTCGACAAACTGTTTTCCCTGTTTTCTACGATGTGGATCCATCTCATGATCAGCTGGTTGGGATGTCAGGAATAAGTAAGTGTATTAAGTTCAGGTCAGAGTTCAAAGAGATTGAAAATATTATTCATAATGTAATAAAAAGATTGGGCCACAGATTCTCAGGGTTTTCTGATGACGTTATCGGAATACAACCTCATATAGAAGCATTGGAAAGCCTTTTGAAATTAAGCTCAGGGGATGATGATGGTTTCCGAGTTTTAGGAATGTGGGGGATGGGTGGAGTAGGAAAGACAACTCTTGCGAATAATGTTAGCAAAATTTATATAGATGGTGGTGTTATTGCTGTGCAAAAGCAAATTCTTTGCCGAACCATAAAAGAGAAAAATTTGGAGGCACACTGTCCTTCTAAAATATCTGCAATTAGCCTTCAGTATATAAGTATTCCTTCAAGGGCGCAAATGCTTGCTTCTCATCAAGCGATTCATCCTTCTGAGAGTCAGAACAGTGAGAACTGCATAGACATACTCAAAAGTCAGAATTTCCAGTCGATTTGGGCTCTCTTTGGTCGTCGGCCATCTTCCGATATTAGCCCGTTGGGCGAGGAAAGTACAAGTTCTAGTTCTTCCGTGGATAATAATAACATCCAAATTCATAGATACGATGTGTTTATCAGTTTTAGAGGTCCGGACACCCGCAATACCTTTGTCGACCATCTCTATGCCAATCTCATTAGAAAAGGTATTTTTGCCTTCAAGGATGACACACGGCTCCAGAAAGGAGAATCCATTTCACCCCAACTTCTGCAGGCAATTCGACATTCACGGAATGGAGTGTACGAGAGTGCCTTCGATTTACACACCCTGGAAAATCCAGGCAAGGTTGATGGATGGAAGAGAGCTATGAACTTGTTGGCCGGATCAGCTGGTTGGGATATAAGGAATAAGCCAGAGTCTGTAGAGATTGAAAAAATTATTCAGGCAGTAATAAAGACACTGGGACATAAATACTCTGGGTTTGCTGATAATCTTATTGGAATACAATCTCGTGTAAAAGCACTAGAAAGCCATTTAAAACTAAGCTCACAGGATAATGGTTTTCGAGTTTTGGGAATATGGGGGATGGGTGGCATAGGAAAAACAACTCTTGCAACTGTCTTGTATGATACAATCTCATATCAGTTTGATGCTTGCTGTTTTATTGAGAACGTCAGCAAAACTTATAGAGATGGTGGTGCCATTGCTGTGCAGAAACAGATTCTTCGCCAAACTATAAAAGAAACAAATCTAGAGGCATCCGGTCCTTCCGAAATATCTGGAATTGTAACAAATAGGTTACACAACATAAAGCTCCTTGTAGTTCTTGATGATGTTGATCAGTTTGAGCAACTACAAGAATTGCATATAAATCCCGAATTGCTTTGCACAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAACCAGTATGGAGTAGATATGGTTTATGAGGCTCAATTGATGAATGATAATGAAGCTTATGAACTTCTGTGTAGAAAAGCCTTCAAAAATGATTGTTCAAGCAACACTTATGCAGAGCTAATTCCTGAGGTACTAAAATATGTTCAAGGTCTTCCGTTAGCAATTAAAGTAATGGGTTCTTTCTTGTGTACCCGAGATGACATGCAGTGGAGAGCTACCTTGGATGGGTTGCAGAATAATCCTAACAGTAGAATTATGGATGTGCTTCAGACAAGTTTTGAGGGACTAGAGCAAAGAGAGAGAGAAATATTTTTGCATATGGCTTGTTTCTTTAACGGGGAGAGGGAGGATTATGTAAGGCGAATTCTAGGTGCTTGTGGATTGCACCCTGATATTGGAATTCCAGTTATCACTGAAAAATCTCTAATAACCATTAGAAACCAGGAAATTCATATGCATAACATGTTGCAAGAGTTGGGGAAGCAAATTGTTCAAGGACACCATCCAAAAAAGCCAGAATTCTGGAGTAGGTTATGGCTTTATGAGGATTTCCATCTTGCGATGACGACAAATGCGAAGGCAATAGAAGTTGAAGCCATAGTTCTAGATCAAAAGGAGGACTTCAAATTCGATGAGTTGTGGGGTGAAGATTTACCAAAAATGCGGCACCTGGAACTGCTTATATTATATGATAAGAATTTTTTAGGAATGCCAGAATTTCTTTCTAATTCCCTACGTTATTTTTCCTGGAATGGTTACCCTTTCTCATCTTTGCCATCAAATTTTCACCCATATAACCTAGTTGAAATGAATATGCCCAATAGCAGCATCGAACAACTATGGATAGGCATTCAGGATCTACCCAATTTGAAAAGGATGGATCTGAGCAACTCAAAAGATCTCACGATGACTCCATGTTTTGAAAGGATCCAAAATCTTGAACGGCTTGATCTTACTGGATGCATCAAATTGTCGAAGGTGGATCCATCAATTGGACTTCTTACAAAACTTGTATTCTTGAGTTTGCAGAACTGTAGTAGTTTGTTTCGCCTCTCTTTCGGCAGGGTATCAAGATTAAATTCTCTGAGAGTTCTACGTCTCTCTGGTTGCTCAATCCTTGAAATCGCTCCAGAACTCTGCGGAGCATCCAATCTTGAATACCTTGATATGAGTGGATGCACAAAGTTATATTTGATTCTTGAATCCACTGGGGCTCTTGCAAAGCTTAGATTCTTAAGTTTGAGAGACTGCATAAGTCTTGTTAGAATACCCTATAGCGTTATTTATATGACATCTCTTACAACTCTAGATTTATGCGGCTGCTTGAAATTGAGGGATCCGCCCCTGAGAGGGATTTCCATATATCCTTCTGATCTTCCTCTGGAATCTTTGATTTTTGTGGACTTCAGCTTTTGCAATATTTCTCACGTACCTGATGCTCTTGGAAAATTAAGGAGTTTAGAAAGACTAAATCTACAGGGGAACAACTTTTCAACACTTCCTCCTACCATCTTTGAGTGGTTTTACAGTCTAGCATATTTGAACTTGTCTCATTGTCATGGTCTTCAATATTTGCCTAAGCTCCCAATAGAAAGTGCTCCATCAGATTTAGTGGGAAGATATTTTAAGACAACATCTGGGTCCCGTGATCATAGGTCTGGATTATATGTTTTTGACTGTCCCGCCATGTACAATCCAACGGATCCGGATCCATTTAAATGGCTACAAAGACTAGTTAAGGTGTGTACTCTGCCTGACCATCACTCTCAGTTTTTCTCCCGATATACCTTGTACTATCAAGATTGGGTCTTCCCTTTGGATGCATGA

Protein Sequence

>Glyur000756s00019301.1
MPKRPFQALLGGEGDNSLQFFRLDSRNTFVDHLYTHLIRTGIFTFKDVTQLQKGESISPQLLQAIRQTVFPVFYDVDPSHDQLVGMSGISKCIKFRSEFKEIENIIHNVIKRLGHRFSGFSDDVIGIQPHIEALESLLKLSSGDDDGFRVLGMWGMGGVGKTTLANNVSKIYIDGGVIAVQKQILCRTIKEKNLEAHCPSKISAISLQYISIPSRAQMLASHQAIHPSESQNSENCIDILKSQNFQSIWALFGRRPSSDISPLGEESTSSSSSVDNNNIQIHRYDVFISFRGPDTRNTFVDHLYANLIRKGIFAFKDDTRLQKGESISPQLLQAIRHSRNGVYESAFDLHTLENPGKVDGWKRAMNLLAGSAGWDIRNKPESVEIEKIIQAVIKTLGHKYSGFADNLIGIQSRVKALESHLKLSSQDNGFRVLGIWGMGGIGKTTLATVLYDTISYQFDACCFIENVSKTYRDGGAIAVQKQILRQTIKETNLEASGPSEISGIVTNRLHNIKLLVVLDDVDQFEQLQELHINPELLCTGSRIIITTRDEHILNQYGVDMVYEAQLMNDNEAYELLCRKAFKNDCSSNTYAELIPEVLKYVQGLPLAIKVMGSFLCTRDDMQWRATLDGLQNNPNSRIMDVLQTSFEGLEQREREIFLHMACFFNGEREDYVRRILGACGLHPDIGIPVITEKSLITIRNQEIHMHNMLQELGKQIVQGHHPKKPEFWSRLWLYEDFHLAMTTNAKAIEVEAIVLDQKEDFKFDELWGEDLPKMRHLELLILYDKNFLGMPEFLSNSLRYFSWNGYPFSSLPSNFHPYNLVEMNMPNSSIEQLWIGIQDLPNLKRMDLSNSKDLTMTPCFERIQNLERLDLTGCIKLSKVDPSIGLLTKLVFLSLQNCSSLFRLSFGRVSRLNSLRVLRLSGCSILEIAPELCGASNLEYLDMSGCTKLYLILESTGALAKLRFLSLRDCISLVRIPYSVIYMTSLTTLDLCGCLKLRDPPLRGISIYPSDLPLESLIFVDFSFCNISHVPDALGKLRSLERLNLQGNNFSTLPPTIFEWFYSLAYLNLSHCHGLQYLPKLPIESAPSDLVGRYFKTTSGSRDHRSGLYVFDCPAMYNPTDPDPFKWLQRLVKVCTLPDHHSQFFSRYTLYYQDWVFPLDA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00756	8221	15153	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000756s00019301.1	PF01582.15	TIR	286	340	1.60E-09
Glyur000756s00019301.1	PF00931.17	NB-ARC	422	667	1.50E-45
Glyur000756s00019301.1	PF13855.1	LRR_8	1016	1073	3.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.043
SRR1783600	control	1.983
SRR1783602	moderate drought stress	1.622
SRR1811619	moderate drought stress	1.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.130
DRR006520	Root Summer glycyrrhizin high producing strain	1.915
DRR006521	Root Winter glycyrrhizin high producing strain	1.610
DRR006522	Root Winter glycyrrhizin high producing strain	1.618
DRR006523	Root Summer glycyrrhizin low producing strain	1.240
DRR006524	Root Summer glycyrrhizin low producing strain	1.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.395
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.332

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.693
SRR2868004	Drought Stress (root)	3.247
SRR2967015	Control (root)	2.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.929
SRR9715740	Leaf	0.941
SRR9715741	Leaf	5.322
SRR9715739	Root	0.280
SRR9715742	Root	7.527
SRR9715743	Root	6.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.781
SRR8749028	MeJA induced 9h	3.509
SRR8749029	MeJA induced 9h	1.494
SRR8749030	Uninduced	1.707
SRR8749031	Uninduced	1.422
SRR8749032	Uninduced	1.399

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.144
SRR8400027	Control - Root	2.337