Gene detail

Gene detail information of Glyur000755s00017996

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20410.1	0	monogalactosyldiacylglycerol synthase 2
NR	XP_003541487.1	0	PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Glycine max]
COG	YP_005440390.1	3.00E-103	monogalactosyldiacylglycerol synthase family protein [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|O82730\|MGDG2_ARATH	0	Monogalactosyldiacylglycerol synthase 2, chloroplastic (Precursor)
trEMBL	tr\|I1LZT6\|I1LZT6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G23150.1}

Sequence

Transcript Sequence

>Glyur000755s00017996.1
AAAGATTCGAATCTTCCTATCAGAACATTCCATCAGAAACAGAGGAGATCGTACGGCCGCGATGCACCGAAGCCACGCAGCCTCNAAAAATTCCATGGCATAAGCATAATTCTCACAAGTCACACACACCCATTATAACAACACAGACGTTGTAAGCACCTCTCTATCACCCCCCCTTCTCGTATTTCGCCAACTCTGCACCAATCATTTTCTCTCCCCTTTCTTCCTTCCTTAACCACACTTTCTCTCTCTCCGCCGGAGAAGAAAACCTCTTGTTTCGGTGGCGGGAACAAGGTTTGACCGTTAGGTGTGTGAACGAACATTTGTTGTTGTTGTTGTTGTTGTTTTTGTTTTCCTTTTGTTATTTGTTTCCTTCCTCTGTGTCTTTTCGGAGACATGGAGGTTTCGATTCCGTCGCCGAGGAAGTCTATAGCGGAAAAGGTGTTTGGAGGATACTATTACAGCCGGAGCAGTAGCAGCAACAGCCAGAAGAAGCGTGAGGCTCAGAGCTCTCACGATGAGGACACCGATGGGGGAATGGAGCTAATGGAAATTGGAGCAGAAAGAACAAAAAACGTGTTGATTCTCATGAGTGATACCGGTGGTGGNCACAGAGCTTCCGCTGAGGCCATTCGTGATGCCTTTCAAATTGAATTCGGTGATGAATACAGGATATTTGTGAAAGATGTTTGGAAAGAGTACACGGGGTGGCCATTGAATGACATGGAGGGACAATATAAGTTCATGGTTAAGCATGTACAGTTATGGAATGTTGCGTTTCATAGCACTTCTCCCAGATGGATTCACTCTGTGTATTTGGCTGCCATCGCTGCTTACTATGCCAGAGAGGTGGAGGCGGGGTTGATGGAGTACAAGCCAGATATTATAATCAGTGTCCACCCTTTGATGCAACATATTCCACTTTGGGTTCTAAAGTGGCAGGGTTTGCAAAAGAAAGTGATTTTTGTCACGGTGATCACAGACCTTACTACCTGCCATCCTACTTGGTTTCATCCTTGGGTGAATAGATGTTACTGCCCTTCAGAGGAAGTGGCTAAGAAAGCCTTACAAGAGGGCCTTGAGGAATCTCAAACCCGAGTTTATGGATTGCCCATTAGGCCTTCTTTTGCCCGTGCAGTTCTTGTGAAGGATCAACTAAGAGAAGAATTTGAGATGGATCCCAACTTGCCGGCAGTTTTGCTGATGGGAGGTGGTGAAGGAATGGGTCCTGTCAAGAAAACTGCAAAGGCTCTTNGAGAAGCACTTTTCGATAAAGAAGCCGAGAAACCAATCGGGCAAATAGTAATCATATGTGGTCGTAATAAGAGCTTAGCATCTACCCTTGAATCGCTTGAATGGAAAGTTCCAGTGAAGATAAGAGGATTTGAGACCCAAATGGCCAAATGGATGGGAGCCTGTGACTGCATCATAACAAAAGCTGGTCCAGGTACAATTGCAGAAGCATTAATCAGAGGGCTTCCCATAATCCTCAATGACTATATCCCCGGACAGGAAAAGGGTAATGTGCCGTATGTGGTAAACAATGGAGCTGGTGTCTTCACCCGTAGTCCTAAGGAAACAGCAAGAANTGTGGCCGAATGGTTCAGCACAAAAACAGATGAACTGAAAAGAATGTCAGAGAATGCACTTAAATTAGCAAACCCAGAGGCCGTGTTTAACATCGTGAGGGACATTCATGAGCTTGCTCAACAACGCGAGCCAGCAAATTTTCCTTACCTGTTGACCTCATCATTTACTAGCCTAATCTAATTGATTATTTGTGCATTTTCACATTAGCCTTTTTTTTCCCCCATTATAATTGACATGTACAGTTAGCTATTCAGGTTACATCATTCTTTATAATTTATCCTAGTGGCTTGGTTTTACTTTCATAAGCTTAATTAAAATTCTGGTAAACAAGCTCTGGTTTTAGAAAAGTCTTGGGATTTATTTAGGATTTTAGTGGGAGGAGATGGTTGTCTGTAACTGCAAGATGGTTTGGCATTCTATGTGCATTTTCAGTCTAANGGTTTTTCTTCAATTCTACCTCTTTGGAATTCTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	99618	103037	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03715	E2.4.1.46	EC:2.4.1.46	Glycerolipid metabolism	map00561

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0009247 glycolipid biosynthetic process

GO:0030259 lipid glycosylation

molecular_function

GO:0016758 transferase activity, transferring hexosyl groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017996.1	PF06925.6	MGDG_synth	72	240	1.80E-60
Glyur000755s00017996.1	PF04101.11	Glyco_tran_28_C	270	387	1.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.937
SRR1783600	control	2.918
SRR1783602	moderate drought stress	2.443
SRR1811619	moderate drought stress	2.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.414
DRR006520	Root Summer glycyrrhizin high producing strain	3.304
DRR006521	Root Winter glycyrrhizin high producing strain	6.435
DRR006522	Root Winter glycyrrhizin high producing strain	6.225
DRR006523	Root Summer glycyrrhizin low producing strain	5.804
DRR006524	Root Summer glycyrrhizin low producing strain	5.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.610
SRR2868004	Drought Stress (root)	22.133
SRR2967015	Control (root)	26.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.974
SRR9715740	Leaf	12.977
SRR9715741	Leaf	12.485
SRR9715739	Root	5.758
SRR9715742	Root	8.604
SRR9715743	Root	6.876

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.606
SRR8749028	MeJA induced 9h	1.156
SRR8749029	MeJA induced 9h	1.417
SRR8749030	Uninduced	1.584
SRR8749031	Uninduced	2.406
SRR8749032	Uninduced	1.653

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.349
SRR8400027	Control - Root	51.351