Gene detail

Gene detail information of Glyur000755s00017991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20090.1	2.00E-132	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003594857.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|O49436\|PP327_ARATH	3.00E-160	Pentatricopeptide repeat-containing protein At4g20090
trEMBL	tr\|G7INC5\|G7INC5_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES65108.1}

Sequence

Transcript Sequence

>Glyur000755s00017991.1
ATGGGTTTCTCCCAAACCCAAACACTACCCTCTTACTCTTCCTCCAACCTCAAACCAAAACCCCATGAACCTCATCCTCCCCCTCCTCCACCGGTTACCGCCGAAATCTTCAAAACAGGTACCAAAGTGGGTCCCCACAAATGGGGTTCTTACAAATTGGGTGATTTATCTTTCTATTCCCTCATTGAGAATCTCGCAGCTTCCTCTGATTTCACATCCCTGGAAGAGCTCCTCCATCAAATGAAGCTCGAAAGAAGGGTCTTCCTCGAGAAGAGTTTCATCCTTGTCTTCAGGGCTTATGGGAAAGCCCATTTGCCTGAAAAAGCGGTGGACTTGTTCCACAGAATGGGGTCTGAATTTCAGTGTAGACAAACCGTGAAATCCTTCAATTCGGTTCTCAATGTGATTATCCAAGAGGGTCTTTTCAATCGTGCCTTGGAGAATTGTGCCCCTGATGCTTATACATACTCTACATTGATGCATGGTTTGTGTAAAGAGGCCAAGCTGGTTGATAATATGTTTCTTAAGGGTTGTGAACCCAATGAAGTGACCTACAATGCGCTTGTTCATGGCCTTTGCCTCAAGGGTAAGTTGGACAAGGCGATGAGTCTATTGGATCGAATGGTGTTGAATAAATGCATGCCTAATGATGTTACTTTTGGAACACTCATTAATGGGTTTGTTAAGCATGGTAGAGCTTCGGATGCGGAGGGGAAATGCAAGCAGGCAATGGAATTGTGGAAGGATATGGTTGAGAAAGGATGTGAACCAAATACTGTGGTGTATAGTGCTCTTATAGATGGTCTTTGCAGGGAAGGGAAGCCAGATGAAGCAAGGGATTACCTATTTGAGATGAAGAATAAAGGTTACCTGCCCAATTCTTTCACTTATAGCTCTCTAATGTGGGGTTTTTTCGAAGCAGGCGATAGCCGTAAAGCCATTCTTGTCTGGAAAGAGATGGTGATTAATAATTGTAATCATAATGAGAATGGGAAGCTTAAGGAGGCCTTAATGGTGTGGAAGCAAATGTTGAGTAGAGGAATTAAATTGGATGTTGTGGCTTATAGTTCAATGATTCATGGCTTTTGTAACGCTCAATTAATAGAACAAGGGCTGAAACTTTTCCATCAGATGCTTTATCAGGAGCCGGCAGAGTTACAACCAGATGTGAATAGCATCTCCCGAGCTATAGATGTTCTAAATATTATGCTAGATCAAGGTTGTGATCCTGATTTTATTACCTGCGATATTTTCTTGAAAACCTTGAGAGATAATATGAACCCGCCTCAAGATGGGAGGGAGTTTCTTGATGAGCTTGTAGTCCGCTCTGCAAACCTCAGAGAATTCGAAAATCCATCAGTGATTGTTGGAGCAGGCTGTGTTGCTGATATCTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	76813	78736	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017991.1	PF01535.15	PPR	96	117	0.017
Glyur000755s00017991.1	PF12854.2	PPR_1	148	168	2.40E-06
Glyur000755s00017991.1	PF13041.1	PPR_2	180	229	1.40E-15
Glyur000755s00017991.1	PF01535.15	PPR	237	255	0.11
Glyur000755s00017991.1	PF13041.1	PPR_2	257	304	1.00E-14
Glyur000755s00017991.1	PF13041.1	PPR_2	329	364	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.108
SRR1783600	control	0.933
SRR1783602	moderate drought stress	1.684
SRR1811619	moderate drought stress	1.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.130
DRR006520	Root Summer glycyrrhizin high producing strain	1.101
DRR006521	Root Winter glycyrrhizin high producing strain	1.246
DRR006522	Root Winter glycyrrhizin high producing strain	1.551
DRR006523	Root Summer glycyrrhizin low producing strain	0.493
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.121
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.991

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.680
SRR2868004	Drought Stress (root)	1.595
SRR2967015	Control (root)	1.976

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.856
SRR9715740	Leaf	0.584
SRR9715741	Leaf	0.835
SRR9715739	Root	0.463
SRR9715742	Root	1.256
SRR9715743	Root	1.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.295
SRR8749028	MeJA induced 9h	1.370
SRR8749029	MeJA induced 9h	0.418
SRR8749030	Uninduced	0.197
SRR8749031	Uninduced	0.109
SRR8749032	Uninduced	0.036

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.124
SRR8400027	Control - Root	2.375