Gene detail

Gene detail information of Glyur000755s00017989

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34960.1	0	cationic amino acid transporter 5
NR	XP_007138860.1	0	hypothetical protein PHAVU_009G243600g [Phaseolus vulgaris]
COG	YP_003342184.1	2.00E-78	amino acid transporter [Streptosporangium roseum DSM 43021]
Swissprot	tr\|O64759\|CAAT5_ARATH	0	Cationic amino acid transporter 5
trEMBL	tr\|V7AZ71\|V7AZ71_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10854.1}

Sequence

Transcript Sequence

>Glyur000755s00017989.1
ATGGATGGCCCTCAACCACAGAAGAGCTATTGGAGATGGAGTAAACAAGATTTCTTGCCAGAGGAGTCCTTTCAAAGCTGGAACAACTATGTTTCTGCTCTTTCACAAACATGGTTTAGGTTCAAGGATCGTCTCCTGAGCAGATCAGATGATGCCACTGAAACACAGGAGCTCAGGAAACAAAGTGAGCATGACATGAAGAGATGCCTCAACTGGTGGGACCTCATCTGGTTCGGGTTNGGTGCAGTAATTGGAGCAGGAATCTTTGTGGTCACTGGTCAAGAACTCCATAACCATGCCGGGCCAGCTATTGTCTTATCCTATGTTGCCTCAGGCATTTCAGCAATGCTTTCTGTTTTCTGCTACACAGAATTTGCTGTAGAAGTCCCAGCTGCAGGTGGTTCATTTGCTTATCTGAGAATTGAATTAGGGGACTTTGTTGCCTTCATAGCAGCTGGGAACATACTTCTTGAAAGCATTCTTGGAAGTGCAGCAGTAGCTAGATCATGGACTTCTTACTTCACAAGCCTCTTGAACCGCCCCAAGAATTCGCTGCGCATCAAGACAGATCTCAAGGATGGATACAACTTGCTGGACCCTATAGCAGTTGTGGTTTTGGTAGCTGCTGGAACAATTGCAATGATCAGCACAAGAAAGACCTCATGTCTCAATTGGATAGCATCTGCAATCAACACAGCTGTGATCATATTCATAATCATTGCANCCTTTGCTCATGCCAACACATCTAATTTGACACCATTTTTACCTTATGGGGCTAAAGGGGTATTTCAAGCTGCTGCAATTGTTTATTTTGCNTATGGTGGATATGACAGTATTGCAACCATGGCTGAAGAAACTAAAAACCCATCAAGGGACATCCCCATAGGCCTTGTTGGGTCAATGTCTATGATCACAGTGATATATTGCTTGATGGCACTCTCACTGAGCATGATGCAGAAATACACAGACATAGACACAGGTGCAGCCTTCTCAGTTGCATTCCAGAGAGTAGGAATGAAGTGGGCAAAGTATGTGGTGGCGATTGGTGCACTGAAGGGTATGACCACAGTGCTTCTTGTGGCAAGACTTGCACAGGCACGTTACATTACTCACATTGCACGTTCCCACATGATACCTCCATGGTTTGCACTTGTGCACCCCAAGACAGGAACCCCTATAAATGCTACACTCTTGATTACAATCTCAAGTGCCTGCATAGCTCTCTTCACAGGCTTGGATGTGTTAACAAGCTTGTTATCAGTGAGCACACTCTTTGTTTTCATGATGATATCTGTTGCCCTTCTAGTAAGGAGGTACTATGTGAGAGGGGTCACACCAAGGGAGAACCTTTCAAAGCTTGTTATCTTCTTGATGCTCATTATTGCTTCCTCAATGGGGATTTCAGCTTATTGGGGACTTAGGCCTAATGGTTGGCTTGGATACACCATCACTGTTCCTGTTTGGTTCTTGTCTACTCTTGGGATGTCATTGTCTTTGACTCAGCAAAGGAAGCCAAAGTCTTGGGGAGTTCCACTTGTCCCATGGTTTCCATCTTTGTCAATTGCAACAAATATCTTCCTCATGGGATCTTTGGGATCTGATGCCTTCATAAGATTTGGAGTATGCACAGTGGTGATGCTGGTGTACTACGTTTTCTTTGGCCTCCATTCAACTTATGATATGGCTCATCAACATCAACAAGAAAAGCTTCAACCGATCCAAGTTAAGCACACAGAGACCATTGAGAATGCTGGGCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	74028	75788	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017989.1	PF13520.1	AA_permease_2	70	467	1.00E-47
Glyur000755s00017989.1	PF13906.1	AA_permease_C	508	556	2.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.277
SRR1783600	control	6.154
SRR1783602	moderate drought stress	5.078
SRR1811619	moderate drought stress	5.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.446
DRR006520	Root Summer glycyrrhizin high producing strain	3.319
DRR006521	Root Winter glycyrrhizin high producing strain	59.064
DRR006522	Root Winter glycyrrhizin high producing strain	56.635
DRR006523	Root Summer glycyrrhizin low producing strain	5.529
DRR006524	Root Summer glycyrrhizin low producing strain	5.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.347

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.701
SRR2868004	Drought Stress (root)	1.669
SRR2967015	Control (root)	2.270

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.285
SRR9715740	Leaf	20.642
SRR9715741	Leaf	23.434
SRR9715739	Root	0.280
SRR9715742	Root	0.800
SRR9715743	Root	0.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.389
SRR8749028	MeJA induced 9h	4.355
SRR8749029	MeJA induced 9h	0.604
SRR8749030	Uninduced	0.390
SRR8749031	Uninduced	0.115
SRR8749032	Uninduced	0.728

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.647
SRR8400027	Control - Root	1.014