Gene detail

Gene detail information of Glyur000755s00017987

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44730.2	5.00E-117	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_004487904.1	2.13E-172	PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3-like isoform X4 [Cicer arietinum]
COG	YP_007171299.1	3.00E-28	haloacid dehalogenase superfamily enzyme, subfamily IA,REG-2-like HAD hydrolase, subfamily IA [Dactylococcopsis salina PCC 8305]
trEMBL	tr\|I1L152\|I1L152_SOYBN	7.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05590.1}

Sequence

Transcript Sequence

>Glyur000755s00017987.1
AGCANGAGGAGTAGAAACGAAATAGGTGCATACAAAGACAAAAGAATGAAACAAAGCATGCAATGTAAGGCAAAGATGCAGAGAAATCATGNACCAAAATAAAAAGATAGAGAGAAATTATTAATATTAAATCTTAAAAAATAAATTTGGGGGTTGTTGCAAGATTTCCTGTTAACATCCCCGGATTGGAAAAGAAGGAAAAAATAAAATCACTTGCCCAAGCCTCTCTCTCTGTCCTTTTTTTCCCCATCTATAAAATGGACTTGTTAATAATAGTGTAGTTGAAGCTTCTTCTGTGGCATTTGTGATTTGGACACAAAGCATCAACCCTTTTCGGTTTGCTTCGCTTCTGGCTTTAATATCAATTTTGAAGGAGTTCAATACTTTACCCTGTTAGATGGTTCCTTGAAATCTATATCGGTATCGCTACACNGGAAATTCTTCTGAACAACGTAGCCAACTAAGGGTGTCTTTGTAATTTGTGCTACCATGTCATTATTGGGTAAACTACGCTGTGTCACTGTAGATGTTACCGGCACCCTAATGGCTTACAAAGGGGAGCTTGGTGACTATTATTGCATGGCAGCCAAATCTGTTGGCCTTCCATGCCCAGACTACAAACGTATGCACGAGGGCTTTAAGCTTGCATATAAGGATATGGCAAAGAATTATCCATGTTTTGGGTTTGCGGCCAAAATGCCAAACATTGTGTGGTGGAAAACCTGTGTGCGAGATTCTTTCGTCAGGGCTGGATATGAATATGATGAGGAGACATTTGAGAAAATTTTCAGACGCATATATGCATCCTTTGGTTCATCTGCTCCATATTCTGTCTTTCCAGATTCCCAACCATTTCTTAGATGGCTTCGCGGAAAGGGTCTCAAAGTTGGCATTGTGAGCAATGCAGAGTATCGGTATCAAGATGTGATTCTTCCAGCTTTAGGTTTAAATGAGGGATCTGAGTGGGACTTTGGTGTGTTTTCTGGTCTCGAAGGTATTGAGAAGCCAAACCNGAAAATTTACGAGATTGCACTTGAGAGGGCTGGAAATATTGCACCTGAAGAAGCTTTACATATTGGCGATAGCATTCGCAAAGACTATGAGCCAGCTAAGAGCATAGGGATGCATGCAATATTGTTGGATAGGTTTAAGACACGGGAAGCCGAGGAGTTTAGGAAATCTGGGGCAGTTGTTCTTCCCGATTTGTTGGCGGCACAAGAATGGCTGTCTTTAGAGAAGTCGTCAACTTGTTAGAGGTTCTATCTTTGCTGAAGTAGTATATTTATGTATCATTTCCCCCCTCTCTGATGACATAACTGTGGCCTTGTGCCATTCCAGCTGGTATCATAACTGCATTTTTCTGAATATTGCTCTTTAGAGCCATGCTTGAGGATCTCTTCTGATGTAGCTCCACCGTAACTTTTTAATACAAATATATCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	69322	72350	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017987.1	PF13419.1	HAD_2	11	216	5.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.323
SRR1783600	control	20.331
SRR1783602	moderate drought stress	12.253
SRR1811619	moderate drought stress	12.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.717
DRR006520	Root Summer glycyrrhizin high producing strain	26.538
DRR006521	Root Winter glycyrrhizin high producing strain	65.697
DRR006522	Root Winter glycyrrhizin high producing strain	64.611
DRR006523	Root Summer glycyrrhizin low producing strain	44.110
DRR006524	Root Summer glycyrrhizin low producing strain	44.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.591
SRR2868004	Drought Stress (root)	16.007
SRR2967015	Control (root)	14.689

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.161
SRR9715740	Leaf	10.639
SRR9715741	Leaf	10.207
SRR9715739	Root	13.015
SRR9715742	Root	13.502
SRR9715743	Root	13.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.651
SRR8749028	MeJA induced 9h	44.330
SRR8749029	MeJA induced 9h	47.568
SRR8749030	Uninduced	24.928
SRR8749031	Uninduced	10.016
SRR8749032	Uninduced	12.769

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.069
SRR8400027	Control - Root	27.716