Gene detail

Gene detail information of Glyur000755s00017983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20050.2	2.00E-135	Pectin lyase-like superfamily protein
NR	XP_003594881.1	0	Polygalacturonase QRT3 [Medicago truncatula]
Swissprot	tr\|O49432\|QRT3_ARATH	2.00E-175	Polygalacturonase QRT3 (Precursor)
trEMBL	tr\|G7INE9\|G7INE9_MEDTR	0	Polygalacturonase QRT3-like protein {ECO:0000313\|EMBL:AES65132.1}

Sequence

Transcript Sequence

>Glyur000755s00017983.1
ATGCTTTTCCCCAACAGCTTCCACACTAACCTGAGGACACCTCAAAACCTCTCACCAAATATGCCAACAATGATGACAAGAAAATCTCTTGTATGGCCCTTGTTTCTGGGGGTGGCTTGTTTCATTGTGATTGGTGTTTATGGTGAGAAAAACTTGCCTCCTAGAACCATTTCTGACGGCAAATATCATGAAGCAATACGCAGGCTGCAGTCCTTTAAGGCCTCTTTAACTAGACATGATTCCATTGCTTCACAACCAATTGCTTCTCAACCAATTGCTTCACAACCAATTGCTTCACAACCAATTGCTTCTCAACCAATTGCTTCAGAACCAATATCTTCCTTCTTACCTTCTTCTCCTTCTCCTTCTCCTCAGGCAATTCAGGCAATTCAATCATGCAAAGCCTTTGACAATCCAAGAGTCTACCTTGTGACATCCTATGGTGCAGACCCAACAGGGAATTCAGACAGCACTGAGGCACTCCTTGCAGCCATAGCAGATGCAGCCAAGGGTCCAAGTGAAGGGTATTTGATGGAAGGCATCAACAACCTTGGAGGTGCACAGATTAATCTTGAGGGTGGAAATTACATGATCAGCAGGTCGCTGCGGTTACCAGTAGCCGGGGTGGGGAACCTCATGATACATGGGGGAACCATAAAAGCCTCAAACGATTTTCCTGAAGATGGCTACATCATTGATTTGTCAACTTCGTCCAGTGACAAGGGTGGAGAAAACGGGAAGAGTTCCCCTTCATCATCCTACAATTTTGAATACATAACTCTCAAGGACCTCTTGTTGGACTCAAACTTCAGGGGAGGTGGTATTTCAGTCATAAATTCACTTAGAACTAGCATAGACAACTGTTACATCACACATTTCACCACCAATGGAATCTTAGTCCAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTTGGCCAGCACATAACTGCTGGAGGGGATAAGAATGAGAGGAACTTCTCAGGCACTGGAATAAACCTCCAGGGTAATGATAATGCTGTTACAGATGTTGTGATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAGGCCAACACTTTTTCTGGTGTGCATTGTTACAATAAGGCCACTGGCTTTGGAGGAACAGGAATTTATTTGAAACTACCCGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACCAGCATCGTTGCGGAAGACCCGGTTCAACTCCATATCTCTAGCAGCTTCTTCCTTGGTGATGCAAATATTGTCCTAAAATCTATGAATGGAGTTGTTAATGGTGTTACTGTTGTTGATAACATGTTTTCAGGCTCAAATCATGGGGTTGAAATTGTTCAGCTGGACCAATCAAAGAGTCCATTCCATCAAATTGATCAAGTTATTGTTGACAGGAACATTGTGAGGGGGATGAACTTAAAGGCCACAGTTGCAAAAATGAATGTCTCTGAGAATCGCGTCGTGATCGAAACAAATGAAGCAGTAACTGCAAATGTTTTTGTCGCGGTGGATCAAAGCATGGCAAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	49097	51361	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017983.1	PF12708.2	Pectate_lyase_3	144	374	4.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.200
SRR1783600	control	0.183
SRR1783602	moderate drought stress	0.465
SRR1811619	moderate drought stress	0.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.529
DRR006520	Root Summer glycyrrhizin high producing strain	1.502
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.667
DRR006524	Root Summer glycyrrhizin low producing strain	1.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.723
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.756

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.832
SRR2868004	Drought Stress (root)	3.493
SRR2967015	Control (root)	3.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.689
SRR9715740	Leaf	0.202
SRR9715741	Leaf	0.338
SRR9715739	Root	0.496
SRR9715742	Root	1.031
SRR9715743	Root	1.155

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.136
SRR8749028	MeJA induced 9h	0.200
SRR8749029	MeJA induced 9h	0.079
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.297
SRR8749032	Uninduced	0.118

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.093
SRR8400027	Control - Root	2.291