Gene detail

Gene detail information of Glyur000755s00017976.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32260.1	1.00E-120	phosphorylcholine cytidylyltransferase
NR	XP_003533684.1	0	PREDICTED: choline-phosphate cytidylyltransferase 1-like [Glycine max]
COG	YP_004672440.1	1.00E-20	hypothetical protein SNE_A20720 [Simkania negevensis Z]
Swissprot	tr\|Q9ZV56\|CCT1_ARATH	2.00E-153	Choline-phosphate cytidylyltransferase 1
trEMBL	tr\|K7LBV6\|K7LBV6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05640.2}

Sequence

Transcript Sequence

>Glyur000755s00017976.1
ATGCCGGTCAGTCTAAGTAGAAAGTTCCAAACAAGAAAGAAGTGTGTGAATCCGATCCAATACGTTATACCATATGTCACAAGTGACAACAGTTGCTGGTTTTTGACTCTGCACAACAACACAACACAAGCATCCTTCACAGTTACACACGCAGAGCAGAGCCAGAGAGTGATGATGGAAGATCAAGATGAGTGTGAAGTTGGCGAAAAGGGTTGCNAGGAAAAGCCTGTTCGAGTTTATGCCGATGGGATTTATGATCTCTTTCACTTCGGCCATGCCCGTTCTCTTGAGCAAGCCAAAAAAGTGTTTCCAAATACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCACAAGTACAAGGGCAAAACTGTTATGACCGAGAAGGAACGCTATGAGTCTCTTCGCCACTGCAAGTGGGTTGACGAAGTTATTCCAGACGCGCCATGGGTAATCACTCAGGAGTTCCTTGACAAGCATCAAGTTGACTATGTGGCACATGATTCTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGATGTCTATGAATATGTTAAGTCTGTTGGAAAATTTAAGGAAACAAAGCGGACTGAGGGAATTTCTACTTCTGATATAATAATGAGAATTATCAAAGATTATAACCAGTATGTAATGCGTAATTTGGACCGTGGTTATACAAGAAAGGACCTAGGTGTCAGCTACGTCAAGGAGAAGAGATTGAGAATGAACATGGGACTTAAAAAATTGCGTGAGAGAGTGAAGAAACAGCAAGAGAAGGTGGGAAATAAGATACAAACAGTAGGAAGAATNGCTGGAATGAACCGCAATGAATGGGTCGAAAACGCGGATCGGTTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGCTGCCACAAAATGGGAACAGCAATCAGAGACAGCATTCAAGAACGACTGAGGGCACAGCAGCTAAAATCTCTTCTTTATGATGAGTGGAGCGATGGTGATGCTGTTGATGATGATGATGAATTCTNCGATGATGAATCCATGGAATACTACAGCGACTAAAGCGACAAGTATGCTTGTTTATTTCCAGATTCTGAACCATTCCGATAATTACGTATCGTTTCTGCAAGATACCATATAAGTCATACATGCAATATGGTTTGGGCATTGTTTGCCTTTGTACATAGTTTGTTGTTTATTTTGTTGTCAAAGAGAAGGTACACATATCACCTGTTTCTGATGGTTTGGACTTTGGATTGGATGCTGAGTTACTTTCAAAACAAAACATTCTAGGATTTTGGAGGCACTTCAGTTTATGAAGGGCCTTCAGATTGTGCAAAGCAAGCTTGCTTAGCTCAAGTGTGGTTGGTATCCTTTGTCTTTGTTGCTNG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00755	25737	29811	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00968	PCYT1	EC:2.7.7.15	Glycerophospholipid metabolism	map00564
			Phosphonate and phosphinate metabolism	map00440
			Choline metabolism in cancer	map05231

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000755s00017976.1	PF01467.21	CTP_transf_2	80	209	1.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	87.022
SRR1783600	control	87.230
SRR1783602	moderate drought stress	106.877
SRR1811619	moderate drought stress	106.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.487
DRR006520	Root Summer glycyrrhizin high producing strain	63.055
DRR006521	Root Winter glycyrrhizin high producing strain	145.021
DRR006522	Root Winter glycyrrhizin high producing strain	141.602
DRR006523	Root Summer glycyrrhizin low producing strain	124.022
DRR006524	Root Summer glycyrrhizin low producing strain	123.811
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	90.970
SRR2868004	Drought Stress (root)	146.199
SRR2967015	Control (root)	119.328

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.930
SRR9715740	Leaf	58.686
SRR9715741	Leaf	87.114
SRR9715739	Root	8.074
SRR9715742	Root	28.249
SRR9715743	Root	25.201

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.247
SRR8749028	MeJA induced 9h	81.281
SRR8749029	MeJA induced 9h	51.631
SRR8749030	Uninduced	63.508
SRR8749031	Uninduced	35.350
SRR8749032	Uninduced	21.866

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.936
SRR8400027	Control - Root	114.055