Gene detail information of Glyur000755s00017972 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55840.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004487917.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LVQ5|PP432_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g55840 |
| trEMBL | tr|G7IG29|G7IG29_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES65158.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00755 | 9624 | 14538 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 119 | 168 | 3.00E-10 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 189 | 238 | 2.00E-16 |
| Glyur000755s00017972.1 | PF12854.2 | PPR_1 | 256 | 288 | 2.20E-10 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 294 | 343 | 3.10E-15 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 367 | 411 | 1.70E-13 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 434 | 483 | 1.30E-09 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 504 | 551 | 3.40E-09 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 575 | 623 | 8.80E-13 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 645 | 693 | 4.40E-10 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 717 | 764 | 4.90E-08 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 787 | 832 | 5.40E-11 |
| Glyur000755s00017972.1 | PF12854.2 | PPR_1 | 851 | 884 | 3.90E-07 |
| Glyur000755s00017972.1 | PF01535.15 | PPR | 894 | 922 | 0.34 |
| Glyur000755s00017972.1 | PF13041.1 | PPR_2 | 961 | 1008 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.473 |
| SRR1783600 | control | 1.543 |
| SRR1783602 | moderate drought stress | 3.003 |
| SRR1811619 | moderate drought stress | 3.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.053 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.935 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.133 |
| SRR2868004 | Drought Stress (root) | 6.690 |
| SRR2967015 | Control (root) | 5.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.482 |
| SRR9715740 | Leaf | 2.765 |
| SRR9715741 | Leaf | 4.008 |
| SRR9715739 | Root | 0.517 |
| SRR9715742 | Root | 2.170 |
| SRR9715743 | Root | 1.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.446 |
| SRR8749028 | MeJA induced 9h | 3.052 |
| SRR8749029 | MeJA induced 9h | 0.479 |
| SRR8749030 | Uninduced | 1.570 |
| SRR8749031 | Uninduced | 0.585 |
| SRR8749032 | Uninduced | 0.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.309 |
| SRR8400027 | Control - Root | 7.534 |