Gene detail information of Glyur000754s00024700 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03100.1 | 1.00E-131 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | XP_003518945.1 | 0 | PREDICTED: rho GTPase-activating protein 2-like [Glycine max] |
| Swissprot | tr|F4JI46|RGAP2_ARATH | 3.00E-174 | Rho GTPase-activating protein 2 |
| trEMBL | tr|K7K8H6|K7K8H6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G17070.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00754 | 73003 | 76259 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000754s00024700.1 | PF00786.23 | PBD | 69 | 104 | 1.00E-09 |
| Glyur000754s00024700.1 | PF00620.22 | RhoGAP | 132 | 268 | 1.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.550 |
| SRR1783600 | control | 5.481 |
| SRR1783602 | moderate drought stress | 8.732 |
| SRR1811619 | moderate drought stress | 8.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.448 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.209 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.581 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.004 |
| SRR2868004 | Drought Stress (root) | 13.268 |
| SRR2967015 | Control (root) | 16.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.206 |
| SRR9715740 | Leaf | 13.366 |
| SRR9715741 | Leaf | 6.441 |
| SRR9715739 | Root | 5.621 |
| SRR9715742 | Root | 6.702 |
| SRR9715743 | Root | 7.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.574 |
| SRR8749028 | MeJA induced 9h | 16.870 |
| SRR8749029 | MeJA induced 9h | 16.261 |
| SRR8749030 | Uninduced | 4.139 |
| SRR8749031 | Uninduced | 1.163 |
| SRR8749032 | Uninduced | 5.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.306 |
| SRR8400027 | Control - Root | 18.069 |