Gene detail

Gene detail information of Glyur000754s00024693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47940.2	0	DEGP protease 2
NR	AIA26574.1	0	serine protease [Cicer arietinum]
COG	YP_001357628.1	3.00E-78	serine protease [Sulfurovum sp. NBC37-1]
Swissprot	tr\|O82261\|DEGP2_ARATH	0	Protease Do-like 2, chloroplastic (Precursor)
trEMBL	tr\|A0A059XQ60\|A0A059XQ60_CICAR	0	Serine protease {ECO:0000313\|EMBL:AIA26574.1}

Sequence

Transcript Sequence

>Glyur000754s00024693.1
CAGAGACAGAGGATAAGAAAACAAAAACAAGAGCGAAGTAGAAGCAGCAACACTGAAGTGTGACTCTCCAATTTGCCGCCTCTTTCTCTCTATCTGTCTCTCATTGATTGTGTTGTGAAAATGGTGGTTNCACTACCCAGCTACACTTCCTTATCCTCTGTGCTATCCTCCACGGTTAAATTTCGCTACTCCCAAAGACACACACACAGTCATAGGCCTATCATTTCCATCCGTTGCAGCCGCACGCCTTCCAATCCCGACCCATTATCTTCTTCCCCCAAACTCAATCGACAAAAGGAAGGGGTAGTGCAGAAGCAGCAGNTGGAGCAATCAAAAGATGAAAGGGCTACTACCAGAGGAAATGTGGTTGAACCAAGTAATTTACAAGATTCGGCTTTCCTCAATGCTGTTGTCAAGGTTTACTGCACGCATGCTGCCCCAGATTACTCACTTCCCTGGCAAAAACGGAGACAACAAACAAGTAGGAAACTAATAACCAACGCACATTGTGTGGAATATGATACACAGGTTAAAGTCAAGAGAAGAGGGGATGATTCAAAATATGTGGCTAAGGTTTTAGCCAGAGGTGTTGATTGTGATATAGCTTTGCTTTCAGTAGAAAATGAGGAGTTTTGGAGAGATGTGGAGCCTCTCAGATTTGGACGTCTGCCACATCTTCAGGATTCTGTAACTGTTGTGGGATATCCTCTTGGAGGAGACACAATTTCGGTGACAAAGGGGGTTGTATCTCGTATAGAGGTTACATCATATGCTCATGGATCGTCCGAATTGTTGGGCATTCAAATTGATGCTGCAATAAATCCTGGTAATAGCGGAGGCCCAGCATTCAATGACCAAGGAGAGTGCATTGGGGTGGCATTTCAGGTCTACAGATCTGAAGAGGCTGAGAATATTGGATATGTGATTCCAACAACAGTTGTATCTCATTTTCTGACTGACTATGAAAAGAATGGCAGGTATACTGGTTTCCCTTGCCTTGGCGTACTTATACAGAAGTTGGAGAATCCTGTACTACGTGCATGTTTGAAAGTACAGTCTAATGAGGGTGTATTGGTACGTAGAGTTGAACCAACTTCTGATGCATATAATGTATTAAAGGAGGGTGATGTGATTGTCAGCTTTGATGGTGTACGTGTTGGTTGTGAAGGAACAGTCCCATTCCGATCAAATGAGCGAATTGCCTTCCACTTCCTCATTAGTCAAAAATTTGCAGGTGATACTGCAGAACTTGGTATCATTAGAGCTGGGACATTAATGAAAGCTAAAGTTGTTTTAAATCCACGAGTTCATTTGGTTCCCTATCACATTGACGAGGGTCATCCTTCCTACTTAATAATTGCGGGTTTAGTGTTCACACCCCTCTCAGAGCCATTGATTGAGCGGGAATGTGAAGACTCTATAGGGCTAAAATTATTGGCAAAGGCACGTTATTCATTGGCAAGGTTTAAAGGGCAACAGATTGTAATTCTTTCACAGGTCTTGGCAAATGAACTCAACATAGCATGCAAGGACAGGTATCTGTGCTTTGAATTTGAAGATAGCTATATTGCTGTTTTGGAGAGAGAAGCTGCTGCTGCTGCTTCATCCTCCATGCTGAGAGACTATGGTATCCCATCTGAAAGATCTTCAGATCTTTTGAAACCATACGTGGATTCACTAGAAGGTGACCAACCAGTAGACCAGGAATTTGGCGATGACCCGGTTTCAAATCTTGAAATTGGCTATGATGGATTGCTCTGGGCATAATACATTTGCACCTGGAGATATCAGTGTGAAATTGTATATTGATTGACACAACCGAAGTCTTGAATATTTTAGTTTTTTCCTTGTCGGATCAAATTTAAAATATCCAAGACNTAAGGCCCATTCAAACTAGGCATTAATAACCTCACNAAATATATTGTAAAATTTTACATTGATTGCATCCAAGACATAATTGTAAGAGTCACTCCTATTTGTACTATTTCTCAAAAAAAATGAGATCAAACCTGAATACTTCCAAGTTTATTAGAAAGAATAAAAAATCTTAATTTTTCTAAGAGTTTTTTTTAATATGTTGGTGTGAAATTTCTCATTGTGACCATATTTGAAGCGTATGGTCACAATTTTGGGCAACAAAAAATGCAGCAACATTGTCAAGGACAACCTATTTTCTTCCACATAGGAATTGAGCTCTTTTCTATTGTCCTATCCCTTCTCTAAAAACAATTCAATGAGAGACAGANAGAGAGGAGGAGGAGGAAGGAAGAAAAGATTATCGCCTCTAGCATGCCCACAAGGTAGCATAAAACCATTCATGTGTAGGTTGCCCTTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00754	28188	38066	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004252 serine-type endopeptidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000754s00024693.1	PF00089.21	Trypsin	104	274	4.40E-16
Glyur000754s00024693.1	PF13180.1	PDZ_2	292	391	8.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.544
SRR1783600	control	2.523
SRR1783602	moderate drought stress	0.545
SRR1811619	moderate drought stress	0.575

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.235
DRR006520	Root Summer glycyrrhizin high producing strain	2.318
DRR006521	Root Winter glycyrrhizin high producing strain	2.834
DRR006522	Root Winter glycyrrhizin high producing strain	2.793
DRR006523	Root Summer glycyrrhizin low producing strain	2.150
DRR006524	Root Summer glycyrrhizin low producing strain	1.929
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.816
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.541
SRR2868004	Drought Stress (root)	0.963
SRR2967015	Control (root)	1.004

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.581
SRR9715740	Leaf	12.049
SRR9715741	Leaf	4.649
SRR9715739	Root	0.598
SRR9715742	Root	0.117
SRR9715743	Root	0.334

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.866
SRR8749028	MeJA induced 9h	1.865
SRR8749029	MeJA induced 9h	0.753
SRR8749030	Uninduced	0.398
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.343
SRR8400027	Control - Root	1.358