Gene detail information of Glyur000753s00021290.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56590.1 | 0 | O-Glycosyl hydrolases family 17 protein |
| NR | KEH27229.1 | 0 | glucan endo-1,3-beta-glucosidase-like protein [Medicago truncatula] |
| Swissprot | tr|Q9FJU9|E1313_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 13 (Precursor) |
| trEMBL | tr|A0A072UBN3|A0A072UBN3_MEDTR | 0 | Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313|EMBL:KEH27229.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00753 | 89806 | 92669 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000753s00021290.1 | PF00332.13 | Glyco_hydro_17 | 26 | 344 | 6.20E-102 |
| Glyur000753s00021290.1 | PF07983.8 | X8 | 367 | 438 | 1.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.434 |
| SRR1783600 | control | 1.407 |
| SRR1783602 | moderate drought stress | 1.028 |
| SRR1811619 | moderate drought stress | 1.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.359 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.519 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.034 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.422 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.798 |
| SRR2868004 | Drought Stress (root) | 4.612 |
| SRR2967015 | Control (root) | 5.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.276 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.516 |
| SRR9715739 | Root | 0.705 |
| SRR9715742 | Root | 0.948 |
| SRR9715743 | Root | 0.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.619 |
| SRR8749028 | MeJA induced 9h | 1.832 |
| SRR8749029 | MeJA induced 9h | 4.022 |
| SRR8749030 | Uninduced | 0.028 |
| SRR8749031 | Uninduced | 0.066 |
| SRR8749032 | Uninduced | 0.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.418 |
| SRR8400027 | Control - Root | 4.746 |