Gene detail

Gene detail information of Glyur000753s00021290

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G56590.1	O-Glycosyl hydrolases family 17 protein
NR	KEH27229.1	glucan endo-1,3-beta-glucosidase-like protein [Medicago truncatula]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|A0A072UBN3\|A0A072UBN3_MEDTR	Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313\|EMBL:KEH27229.1}

Sequence

Transcript Sequence

>Glyur000753s00021290.1
CACAGTAACTATANTATAGATAGCATTTGTTGCTTATCCAATTTAATCTAACAGATCTTATAGTAAACAGTAAATTGAAAAATTTATGCATTGTTAATCTTATTAAAATTAAAATGATTTAACAAATATAGTACAGTACTACACGCCACTCCAGGGAGTAGGGGACTGGTAGAGAGGCACATTCAAGGAGACAAGGACCGTTGTTTTGTTTCTGAAGCAGGAAAAGGAACAAGAAGTAGCTTCACTCTCTTCTTATNCTGATCAGCATTCAGAGATAGAGAGCAATGGCAAGAGGGTTTAGGTTCATCTTTGCTGCATCACTTTTGCTCATGCTTCTGGATTGTTGCCATGGGAGTTTTGTTGGGATTTGCTATGGAAGAAATGCTGATGACCTCCCTACACCTGACAAGGTGGCACAGCTGGTTCAACTTCACAAAATCAAATATGTGAGGATCTATGATTCCAATATACAGGTTCTAAAGGCNTTTGCNAACACTGGAGTTGAACTCATGATTGGGATTCCAAATCTAGATTTGCTGCCATTCTCCCAGTTCCAATCTAATGCAGACACTTGGCTGAGAAACAGCATCCTTCCTTACTATCCAGCCACCAAGATCACATACATAACCGTCGGCGCAGAAGTCACAGAAAGTCCCAACAATGTATCTGCATTAGTTGTGCCAGCCATGAATAATGTCCTTNCAGCACTCAAGAAAGCTGGACTCCATAAAAAGATAAAAGTTTCCAGTACTCATTCCCTCGGTGTTCTGTCTCGATCATTCCCACCTTCTGCAGGGGCTTTCGCTAGCAAACATGCTCATTTCTTGAAGCCATTGTTGGAATTTCTTGCGGAAAATCAGTCACCTTTTATGATTGATATATATCCTTATTATGCATACCGAGACTCCGNGAACAAAGTGTCCTTGGACTATGCCCTTTTCGAGTCATCCTCCGAAGTTGTTGATCCGAACACCGGTTTGCTGTATATGAACATGTTTGATGCTCAGATTGATGCTATTTATTTTGCGCTGATGGCCCTGAATTTCAGGACAGTTAAAGTAATGGTAACCGAAACAGGTTGGCCTTCCAAAGGATCACCTAAGGAGACAGCTGCAACTCCTGATAATGCACAAACTTACAATACCAATCTGATAAGGCGTATTCTCAATGACACCGGTACGCCTGCAAGGCCAGGAGAAGAGCTAGATGTCTACGTTTTTTCACTGTTCAATGAAAATANGAAGCCTGGTTTGGAATCCGAGAGGAACTGGGGATTGTTTTATCCAGACCAGACGAGTGTGTATGACCTAGATTTCACCGGAAGTGGTGCTGTTGATATGACTACAGGGGCAAATGTGACCGGAATCGGATCAAATGGAACAACATGGTGTATTGCTTCGAGTAAGGCCTCGGAAATTGACTTACAGAATGCCATAGATTGGGCTTGNGGTGCTGGCAATGTGGATTGTACTGCTATCCAGCCAAGTCAGCCTTGTTTTGAGCCAGATAACATAGCCTCACATGCATCATATGCTTTTAATAGCTATTACCAGCAAAATGGGGCCTCTGATGTTGCTTGTAGCTTTGGAGGGACTGGTGTAATAGTTGATAAGGATCCAAGTATGTTCATACGTCCCATCGCCAATTTTTCCTTTTCTATTTTTTTTCCTGTCTATTTTTTATTGTTTTGGTCACTGAAGAAACTACTTGTTTTCGATTCTGCAGCGTATGACAACTGCATCTACGTGAGAACTGGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00753	89806	92669	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000753s00021290.1	PF00332.13	Glyco_hydro_17	26	344	6.20E-102
Glyur000753s00021290.1	PF07983.8	X8	367	438	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.434
SRR1783600	control	1.407
SRR1783602	moderate drought stress	1.028
SRR1811619	moderate drought stress	1.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.359
DRR006520	Root Summer glycyrrhizin high producing strain	3.519
DRR006521	Root Winter glycyrrhizin high producing strain	0.004
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.034
DRR006524	Root Summer glycyrrhizin low producing strain	2.188
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.798
SRR2868004	Drought Stress (root)	4.612
SRR2967015	Control (root)	5.215

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.276
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.516
SRR9715739	Root	0.705
SRR9715742	Root	0.948
SRR9715743	Root	0.869

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.619
SRR8749028	MeJA induced 9h	1.832
SRR8749029	MeJA induced 9h	4.022
SRR8749030	Uninduced	0.028
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.915

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.418
SRR8400027	Control - Root	4.746