Gene detail

Gene detail information of Glyur000753s00021281

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29240.1	3.00E-126	Leucine-rich repeat (LRR) family protein
NR	XP_004513070.1	0	PREDICTED: leucine-rich repeat extensin-like protein 6-like [Cicer arietinum]
COG	YP_004775215.1	5.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LHF1\|LRX4_ARATH	1.00E-106	Leucine-rich repeat extensin-like protein 4 (Precursor)
trEMBL	tr\|G7KQI2\|G7KQI2_MEDTR	0	LRR/extensin {ECO:0000313\|EMBL:AES76976.1}

Sequence

Transcript Sequence

>Glyur000753s00021281.1
ATGGAGAAGAGCTGGGTTCTGGCTTTTCTCCTTCTCATTCTCCATTTGGGTACAACAAAAGCTGCAACCTTTGGTGTTGGTGGCGGTATTGGGGTAGGTGTTGGTGTTGGCAATGATGGTGGTGGTGTGGTTTGGATTGGGGGAGGGATCAACAACAGCCCAAAGTCCTCCTATGGATCTTCAGTGCCAAATCTGGATTCAGCTTATACAGCTCTTCAGGCTTGGAAATCTGCAATCACTGATGACCCATTGAAGATTTTAGATAGTTGGGTTGGTTCCAATGTGTGTTCTTACAAAGGAGTTTTCTGTGCAAGTCCTCAAGATGAAACGGCTGCATCATCATCAGCGGCTGTTTCAGTAGTAGTTGCAGGCATAGATCTAAACCATGCAAATCTCCAAGGAACTCTCGTCAAAGAGCTCTCTTTACTCACTGATATGTCTCTTCTCCACCTCAACAGTAATAGGTTCGCGGGCACTGTTCCTGATACCTTCAAGGACCTCATGTCTCTGGAAGAGTTAGACCTAAGCAACAACCAGCTTTCAGGTCCTTTCCCTGAGGTTATTTTGTACATGCCAAGCCTAGTCTACTTGGACATCAGATTCAACTCCTTCTCTGGGTCCCTCCCTCAGGAACTTTTCAATAAGAATCTAGATGCAATATTCCTCAACAACAACCAATTTGAAGGTGAGATTCCACAGAATTTGGGTAACTCCCCTGCCTCAGTGATAAATTTAGCCAACAACAAGTTGAGTGGAAACATCCCAGCTAGTTTTGGCTTCATGGGTTCTAAGATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGTATTCCTGAAGGAGTTGGGCTCTTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAATGCACTTATGGGTCATTTGCCAGACACACTATCTTGCCTGCAAAACATTGAAGTCCTGAATTTGGCACACAATCAGCTTTCTGGGGAGTTATCAGATATAATCTGCTCTCTGAGAAGCCTGGCAAATCTAACAGTTGCTTACAACTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCTGGAAGGAACATGCAGAGACCTCAACCAGAGTGCTCTGTGATCCCAGNTGGTAGCCTAAGTTGTCTCAGAATTCCAACACCAAAGCCTTTTGTTTGTGGTTCTCTTACTGTAAGTAACTCTAAGCAAAGTACTGATGCCACTTCACAATCTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00753	47904	49175	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000753s00021281.1	PF08263.7	LRRNT_2	69	103	4.70E-07
Glyur000753s00021281.1	PF13855.1	LRR_8	148	203	8.90E-08
Glyur000753s00021281.1	PF13516.1	LRR_6	310	328	0.15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.430
SRR1783600	control	9.638
SRR1783602	moderate drought stress	8.262
SRR1811619	moderate drought stress	8.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.737
DRR006520	Root Summer glycyrrhizin high producing strain	14.839
DRR006521	Root Winter glycyrrhizin high producing strain	4.793
DRR006522	Root Winter glycyrrhizin high producing strain	4.473
DRR006523	Root Summer glycyrrhizin low producing strain	10.748
DRR006524	Root Summer glycyrrhizin low producing strain	11.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.742
SRR2868004	Drought Stress (root)	10.385
SRR2967015	Control (root)	7.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.487
SRR9715740	Leaf	1.385
SRR9715741	Leaf	0.863
SRR9715739	Root	8.517
SRR9715742	Root	6.390
SRR9715743	Root	7.119

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.838
SRR8749028	MeJA induced 9h	4.301
SRR8749029	MeJA induced 9h	4.433
SRR8749030	Uninduced	1.226
SRR8749031	Uninduced	1.907
SRR8749032	Uninduced	4.498

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.913
SRR8400027	Control - Root	19.053