Gene detail information of Glyur000752s00022797 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53710.2 | 9.00E-87 | ARF-GAP domain 6 |
| NR | XP_004495006.1 | 0 | PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9M354|AGD6_ARATH | 2.00E-122 | Probable ADP-ribosylation factor GTPase-activating protein AGD6 |
| trEMBL | tr|Q2PER6|Q2PER6_TRIPR | 0 | Putative Asp1 {ECO:0000313|EMBL:BAE71286.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00752 | 73250 | 78281 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000752s00022797.1 | PF01412.13 | ArfGap | 5 | 91 | 6.20E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.030 |
| SRR1783600 | control | 34.070 |
| SRR1783602 | moderate drought stress | 28.595 |
| SRR1811619 | moderate drought stress | 29.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 133.675 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 131.629 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.294 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.963 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.167 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.383 |
| SRR2868004 | Drought Stress (root) | 72.958 |
| SRR2967015 | Control (root) | 66.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.021 |
| SRR9715740 | Leaf | 31.090 |
| SRR9715741 | Leaf | 41.122 |
| SRR9715739 | Root | 17.006 |
| SRR9715742 | Root | 36.920 |
| SRR9715743 | Root | 30.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.014 |
| SRR8749028 | MeJA induced 9h | 83.337 |
| SRR8749029 | MeJA induced 9h | 72.467 |
| SRR8749030 | Uninduced | 76.520 |
| SRR8749031 | Uninduced | 68.160 |
| SRR8749032 | Uninduced | 79.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.325 |
| SRR8400027 | Control - Root | 63.713 |