Gene detail

Gene detail information of Glyur000752s00022796

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02540.1	1.00E-103	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003637512.1	0	Retinol dehydrogenase [Medicago truncatula]
COG	YP_001830924.1	4.00E-52	short-chain dehydrogenase/reductase SDR [Beijerinckia indica subsp. indica ATCC 9039]
Swissprot	tr\|A2RVM0\|TIC32_ARATH	9.00E-100	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|G7ZZL2\|G7ZZL2_MEDTR	0	Short-chain dehydrogenase TIC 32 {ECO:0000313\|EMBL:KEH42385.1}

Sequence

Transcript Sequence

>Glyur000752s00022796.1
ATGGTGGGTGTCTTCTCTTTGGTAACAGGGATTCCGGGACCAAGTGGATTTGGATCCGCCACAACTGCAGAACAGGTTACTGAGGGAATTGACGCCAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGATTGGAGACAGCACGAGTCCTGGCTCTTAGAAAGGTCCATGTCATTATTGCCGCTAGAAACATGGATTCCGCAAAGGAAGCCAAACAACTCATACTGCAAGACAACGAGTACGCTCGATTGGACATTATGAAGCTCGATCTTTGCTCAGTGAAGTCTGTTAGTTCGTTTGTGAAAAACTTCCTCGCTTTTGATCTTCCTCTCAACATCTTAATAAACATGGATTCCGCAAAGGAAGCCAAACAACTCATACTGCAAGACAACGAGTACGCTCGAGTGGACATAATGAAGCTCGATCTTTGCTCAGTGAAGTCTATGAAAGAAACCGCAAAAAACACTGGAATCGAGGGCAGGATCATAAATCTGTCATCAATTGCTCACACTTACACTTACGNACAGGGCATTCGGTTTGATAACATAAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAATCCAAGTTAGCCAACATATTACATGCAAATGAGCTTTCTCGTCGTTTGAAGGAAGAGGGTGTCAACATCACAGCCAACTCAGTGCACCCAGGACTGATCATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAATTTCTTGAAGATGTTCACCTTTTTTATATGGAAGAATGTCCCACAGGGAGCTGCCACAACATGCTATGTTGCTCTGCATCCAAGTTTGAAAGGTGTAACCGGGAAGTACTTTCTGGATTGTAATGAGTTTCAACCAAGTGCACTTGCGTCAAACGAACTCTTGGGAAGAAAACTGTGGGATTTTAGCAACAAGTTGATCAATTCAATTTTAAAAGCTTGATTGTCCCTTCAGGGAACAGAGCACTATCGTCTTTGTCATAAGTGTATCATAACTCGTTATTCTTAAGATACCCACTCAAGTTCTAAGTCCTGTGAAAATATTTCCCGAACATTTGACTCGTAGTTATCAATAATTCCGCTTNTTGTCTGTACGCGTAATATAGAAGCCTTCTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00752	51811	63242	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000752s00022796.1	PF00106.20	adh_short	36	176	3.50E-13
Glyur000752s00022796.2	PF00106.20	adh_short	36	167	1.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.094
SRR1783600	control	0.070
SRR1783602	moderate drought stress	0.133
SRR1811619	moderate drought stress	0.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.341
SRR2868004	Drought Stress (root)	1.480
SRR2967015	Control (root)	0.639

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.061
SRR9715740	Leaf	9.761
SRR9715741	Leaf	21.884
SRR9715739	Root	0.000
SRR9715742	Root	1.473
SRR9715743	Root	1.024

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.031
SRR8749028	MeJA induced 9h	1.480
SRR8749029	MeJA induced 9h	0.703
SRR8749030	Uninduced	0.968
SRR8749031	Uninduced	3.839
SRR8749032	Uninduced	1.638

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.716
SRR8400027	Control - Root	2.953