Gene detail information of Glyur000752s00022790.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37520.1 | 0 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain |
| NR | XP_006594080.1 | 0 | PREDICTED: uncharacterized protein LOC100808999 [Glycine max] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 3.00E-07 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7LZH4|K7LZH4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19440.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00752 | 10342 | 23344 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000752s00022790.1 | PF00628.24 | PHD | 542 | 584 | 1.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.320 |
| SRR1783600 | control | 9.304 |
| SRR1783602 | moderate drought stress | 12.708 |
| SRR1811619 | moderate drought stress | 12.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.555 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.699 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.740 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.636 |
| SRR2868004 | Drought Stress (root) | 26.226 |
| SRR2967015 | Control (root) | 29.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.848 |
| SRR9715740 | Leaf | 20.214 |
| SRR9715741 | Leaf | 21.546 |
| SRR9715739 | Root | 4.925 |
| SRR9715742 | Root | 23.252 |
| SRR9715743 | Root | 20.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.525 |
| SRR8749028 | MeJA induced 9h | 32.467 |
| SRR8749029 | MeJA induced 9h | 13.541 |
| SRR8749030 | Uninduced | 17.280 |
| SRR8749031 | Uninduced | 13.728 |
| SRR8749032 | Uninduced | 12.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.794 |
| SRR8400027 | Control - Root | 20.692 |