Gene detail

Gene detail information of Glyur000750s00031901

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45240.1	0	methionine aminopeptidase 1A
NR	XP_004514335.1	0	PREDICTED: methionine aminopeptidase 1A-like [Cicer arietinum]
COG	YP_635197.2	3.00E-94	methionine aminopeptidase [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q9SLN5\|MAP1A_ARATH	0	Methionine aminopeptidase 1A {ECO:0000255\|HAMAP-Rule:MF_03174}
trEMBL	tr\|K7KCI9\|K7KCI9_SOYBN	0	Methionine aminopeptidase 1 {ECO:0000256\|HAMAP-Rule:MF_03174}

Sequence

Transcript Sequence

>Glyur000750s00031901.1
GTTTCCTTCCTCAGCACGAAGTTATAGTTGACCAAAAAACAGGCACGAAGTTATAAAATTTCTGTCTTCCCTATTCCGCAGATTGTTGTTCCAATTTCTATTTCTATTCACATATCCGCAAACCCTAACCTTCAGTTGTTTGCAACGATCGATATGGCTGGTGAATCTGATGTGTCCGAAAATACTCTTTCTTGTGCTAACTGTGGCAAACCTGCAAATCTTCAGTGTCCAAAATGCATGGAATTGAAGCTTCCTCGTGAAGGTTCTGCCTTCTGCACTCAGGAATGTTTCAAGTCTTCATGGAGTTCGCACAAATCAGTGCATCTGAAGGCAAAGCTATCCTCAGTTGGCACGCAGAATCCAGACNCACTTGGTGAAGGTTGGTTATATTGCTTGAAGAGAGGGCAGGGTCGAACTCCAAAGCTTCCTCACTTTGATTGGACTGGGTCGCTGCGGCCATATCCCATATCTGGTAAACGGATTCTCCCAGCTCATATTCTTAAACCTGATTGGGCTGATGATGGAATTCCCAAAGTTGAGCCCAATAGTGATCTGCAACATACTGTTGAGATCAAATCTCCAGATCAAATTGAGAGGATGAGAGAAACTTGTCGGGTTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACAACTGATGAAATTGACAGAGTTGTTCACGAGGCTACTATTGCTGCAGAAAATATTAGCATTACTATAGCTGGTGAGCATACATCTTTGGAGGATACCCCTCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTAGGTCAGTTAATGAAGTAATCTGCCATGGGATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTNAGTTGATCAACATATATGTGTTACACCGTGATCTCAATGAAACATACTTTGTGGGAAATGTGGACGAAGAGTCTCGCCAGCTGGTCAAATGCACATACGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGGTACGATTCCGTGAAATTGGCGAAGTTATTAATCGTCATGCTTCAATGTCAGGCTTCTCAGTGGTAAAATCATATTGTGGTCATGGAATTGGGGAGCTCTTCCATTGTGCACCTAACATTCCTCATTATGGAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGTCAGACCTTTACAATTGAACCAATGATCAATGCAGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTCACAGCAGATGGTAGACGAAGTGCTCAATTTGAGCACACTCTTTTGGTGACAGAAACTGGGGTTGAAGTTTTAACAGGGAGGTTGCAGACATCACCAAATGTTTTTCCTTGGCTAAATTCATAATTGGGTGAATCCGGAAAAGAGATGCCAGCATTTTCTAAATACCATACAATTAATAGACAACCATGTTCCTCTGGTTGCCTCTCTTTTTTGGGTATCATGTTTGTAACTCAAAATTCAATTCAGTTTAGGTGAAAAGTTTGANGAGTGATATATTTTGTGTATTTGAAGATAATTTGATTTTGTAATTTTGTCGTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00750	49014	55560	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000750s00031901.1	PF01753.13	zf-MYND	14	56	3.60E-05
Glyur000750s00031901.1	PF00557.19	Peptidase_M24	132	186	4.60E-05
Glyur000750s00031901.1	PF00557.19	Peptidase_M24	147	400	1.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.737
SRR1783600	control	12.794
SRR1783602	moderate drought stress	10.981
SRR1811619	moderate drought stress	10.860

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.039
DRR006520	Root Summer glycyrrhizin high producing strain	23.579
DRR006521	Root Winter glycyrrhizin high producing strain	28.606
DRR006522	Root Winter glycyrrhizin high producing strain	27.844
DRR006523	Root Summer glycyrrhizin low producing strain	18.901
DRR006524	Root Summer glycyrrhizin low producing strain	18.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.249
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.364

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.755
SRR2868004	Drought Stress (root)	55.779
SRR2967015	Control (root)	56.174

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.659
SRR9715740	Leaf	28.814
SRR9715741	Leaf	36.193
SRR9715739	Root	26.983
SRR9715742	Root	28.496
SRR9715743	Root	28.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	93.880
SRR8749028	MeJA induced 9h	58.838
SRR8749029	MeJA induced 9h	76.230
SRR8749030	Uninduced	62.274
SRR8749031	Uninduced	61.296
SRR8749032	Uninduced	67.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.729
SRR8400027	Control - Root	40.336