Gene detail information of Glyur000749s00022606 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32230.2 | 1.00E-83 | WWE protein-protein interaction domain protein family |
| NR | KHN38948.1 | 0 | Inactive poly [ADP-ribose] polymerase RCD1 [Glycine soja] |
| Swissprot | tr|Q8RY59|RCD1_ARATH | 3.00E-96 | Inactive poly [ADP-ribose] polymerase RCD1 |
| trEMBL | tr|I3SJA6|I3SJA6_MEDTR | 5.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:AFK40348.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00749 | 111268 | 118027 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000749s00022606.1 | PF02825.15 | WWE | 86 | 138 | 4.80E-05 |
| Glyur000749s00022606.1 | PF12174.3 | RST | 408 | 476 | 3.90E-29 |
| Glyur000749s00022606.2 | PF02825.15 | WWE | 76 | 128 | 4.70E-05 |
| Glyur000749s00022606.2 | PF12174.3 | RST | 398 | 466 | 3.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 66.586 |
| SRR1783600 | control | 67.943 |
| SRR1783602 | moderate drought stress | 98.546 |
| SRR1811619 | moderate drought stress | 98.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 81.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 80.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 128.768 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 125.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 101.775 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 103.368 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.650 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 129.307 |
| SRR2868004 | Drought Stress (root) | 153.633 |
| SRR2967015 | Control (root) | 143.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.440 |
| SRR9715740 | Leaf | 113.953 |
| SRR9715741 | Leaf | 140.521 |
| SRR9715739 | Root | 21.873 |
| SRR9715742 | Root | 70.365 |
| SRR9715743 | Root | 66.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 191.492 |
| SRR8749028 | MeJA induced 9h | 158.045 |
| SRR8749029 | MeJA induced 9h | 202.771 |
| SRR8749030 | Uninduced | 206.695 |
| SRR8749031 | Uninduced | 372.821 |
| SRR8749032 | Uninduced | 250.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 120.925 |
| SRR8400027 | Control - Root | 109.084 |