Gene detail information of Glyur000749s00022594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65420.1 | 5.00E-74 | CYCLIN D4;1 |
| NR | XP_004489764.1 | 0 | PREDICTED: cyclin-D4-1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8LGA1|CCD41_ARATH | 2.00E-89 | Cyclin-D4-1 |
| trEMBL | tr|G7JXR1|G7JXR1_MEDTR | 0 | Carboxy-terminal domain cyclin {ECO:0000313|EMBL:AES96046.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00749 | 33976 | 35984 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000749s00022594.1 | PF00134.18 | Cyclin_N | 70 | 193 | 4.40E-28 |
| Glyur000749s00022594.1 | PF02984.14 | Cyclin_C | 197 | 289 | 3.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.444 |
| SRR1783600 | control | 2.353 |
| SRR1783602 | moderate drought stress | 1.142 |
| SRR1811619 | moderate drought stress | 0.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.398 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.391 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.423 |
| SRR2868004 | Drought Stress (root) | 3.473 |
| SRR2967015 | Control (root) | 3.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.346 |
| SRR9715740 | Leaf | 3.870 |
| SRR9715741 | Leaf | 2.956 |
| SRR9715739 | Root | 2.050 |
| SRR9715742 | Root | 3.850 |
| SRR9715743 | Root | 2.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.519 |
| SRR8749028 | MeJA induced 9h | 2.026 |
| SRR8749029 | MeJA induced 9h | 1.445 |
| SRR8749030 | Uninduced | 1.925 |
| SRR8749031 | Uninduced | 1.033 |
| SRR8749032 | Uninduced | 0.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.914 |
| SRR8400027 | Control - Root | 4.852 |