Gene detail

Gene detail information of Glyur000748s00025529

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61030.1	1.00E-44	glycine-rich RNA-binding protein 3
NR	XP_006585775.1	1.73E-97	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Glycine max]
COG	YP_003267833.1	1.00E-27	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9FNR1\|RBG3_ARATH	3.00E-52	Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBL	tr\|K7L8N4\|K7L8N4_SOYBN	6.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G26900.3}

Sequence

Transcript Sequence

>Glyur000748s00025529.1
CCCTAATATTTCTTTAGGTCAGCGAGGGTTTTGGCACCTTCTTCACATTCTCGAGTTGTGAAGCAGAGAGAAGAGAACCCTGCACCTGCAAGGTTTGAGCAATGGCGTTCGTCAGTAAAATTGGAAAATTACTCAAGAGTTCTGCTGTCAAGCACATCAATCAAGATGTTTCCATGTCTACTCCTTCGTTATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTGTTTGTTGGAGGTATTTCATATAGCACTGATGATATGAGTCTGCGAGAAGCTTTTGGTCGCTATGGAGAAGTACTTGATGCAAAGGTTATTATGGATCGTGAAACAGGCCGGTCCCGAGGTTTTGGCTTCATAACTTTTGCAACGAGCGAGGATGCATCTTCTGCCATTCAGGCCATGGATGGCCAGGATCTTCATGGCCGGAGCATACGGGTGAATTATGCTACAGAAAGGTCACGTCCTGGGTTTGGTGGCGGCGGCGGCTATGGCGGTGGTGGCGGTGGATATGGCGGTGGTGGCAGCTATGGCGGTGGTGGATATGGTGGCGGTGGCTATGGAGGCAATGATAACAACAGCGGTGGAAGCTATGGAAGTGGTGGTTATGGTGTCGCAAGCAGCTATGGCGGTGGTGGCAATACTGAGACTAGTTACACTGGTGGTGGTGGTGNTGCTGGTAATTACCAATTCAATGAAAATTCCGGGGATCTTGGCTCTGCTGGTGGTGAATTCACTGAGCCACTTGAAGACAATCATGTGAAGGAGAACAATGATGAACCTGATGGCTATGCTCAGAACCGGGGGTGAGAGTATTTTCATCATGAAGGAATTCCTTGCTTAAAGAGCATGCAGCCCTGTGGGGTTGATGATATAATCAAAATGTTTTTCTAATATTTGTCTACATTTTCCCCTTTAGTTTTCAGAACTTCATTGTTTGTCTTGAATAAGAGTTTTCTTGGATGGATTGCAACTAAATTTAGAATGATTTTGTTTTTCTTCGACCATTTTGACACCTGGATTGGTAAACGTGTATACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00748	86917	89699	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000748s00025529.1	PF00076.17	RRM_1	42	112	5.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.188
SRR1783600	control	58.967
SRR1783602	moderate drought stress	50.693
SRR1811619	moderate drought stress	50.224

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.188
DRR006520	Root Summer glycyrrhizin high producing strain	109.671
DRR006521	Root Winter glycyrrhizin high producing strain	48.833
DRR006522	Root Winter glycyrrhizin high producing strain	49.554
DRR006523	Root Summer glycyrrhizin low producing strain	73.989
DRR006524	Root Summer glycyrrhizin low producing strain	77.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	75.585
DRR006526	Leaf Summer glycyrrhizin high producing strain	75.451

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	248.209
SRR2868004	Drought Stress (root)	166.608
SRR2967015	Control (root)	169.806

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	123.969
SRR9715740	Leaf	159.033
SRR9715741	Leaf	121.366
SRR9715739	Root	64.806
SRR9715742	Root	89.597
SRR9715743	Root	86.252

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	171.993
SRR8749028	MeJA induced 9h	89.412
SRR8749029	MeJA induced 9h	168.262
SRR8749030	Uninduced	30.776
SRR8749031	Uninduced	29.530
SRR8749032	Uninduced	36.545

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	215.589
SRR8400027	Control - Root	190.475