Gene detail information of Glyur000748s00025526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02110.1 | 0 | serine carboxypeptidase-like 25 |
| NR | XP_004489523.1 | 0 | PREDICTED: serine carboxypeptidase-like 25-like [Cicer arietinum] |
| COG | NP_902682.1 | 1.00E-29 | serine carboxypeptidase [Chromobacterium violaceum ATCC 12472] |
| Swissprot | tr|Q8L9Y0|SCP25_ARATH | 0 | Serine carboxypeptidase-like 25 (Precursor) |
| trEMBL | tr|A0A072TVX1|A0A072TVX1_MEDTR | 0 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00748 | 68433 | 74143 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000748s00025526.1 | PF00450.17 | Peptidase_S10 | 42 | 460 | 5.00E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.040 |
| SRR1783600 | control | 0.041 |
| SRR1783602 | moderate drought stress | 0.549 |
| SRR1811619 | moderate drought stress | 0.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.767 |
| SRR2868004 | Drought Stress (root) | 3.478 |
| SRR2967015 | Control (root) | 7.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.584 |
| SRR9715740 | Leaf | 24.260 |
| SRR9715741 | Leaf | 20.001 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.900 |
| SRR9715743 | Root | 0.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.402 |
| SRR8400027 | Control - Root | 1.104 |