Gene detail

Gene detail information of Glyur000748s00025518

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60980.2	9.00E-86	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
NR	XP_006585781.1	0	PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9XJ54\|NTF2_ORYSJ	2.00E-08	Nuclear transport factor 2
trEMBL	tr\|I1KWF6\|I1KWF6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G27040.1}

Sequence

Transcript Sequence

>Glyur000748s00025518.1
ATGGCCTTGCAAACAGCTACAAATCCAACTACTCCTAGTGCCCAAGTGGTTGGCAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGAATTGGTCTATCGGTTTTACCAAGACTCTAGTGTGATAAGTCGTCCTGATTCCAATGGTGTGATGACATCNGTTTCAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTCAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCGTACAAGGAAGGAGTGACTGTGCTGGTGACTGGATGCTTGACTGGAAATGATAACTTGAGAAGAAATTTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATCAATCTTCGGAACCGCAGCCAGTTAATGGAGATGAGCCCAGTCACGTTGCTGATCCTTCTGCACTGGACCCTGCAAATGCTCATGTGAAAGAGGGCCAAGTCGTTGCTGAGAGTGCTTATGATCCATCTAACCTTCATGAGACACAGATAGTTGCTGAAAATGAAGACATTGTAGAACCAGATTTTCAGTCAAATGGAAATGATGATTCTCAGGCCACAGAAATTACTTCTTCAGCTCAAGAGGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCGGGATCAGCTAAAGTCTATGTGCCTACCAATACTGTAAAGCCTAACAAAACTGAGAGCAAGGTAGTTGAGTCAGTAGAATCTACTGCAGTGCCTGAAGCAGCACCAGATAGTGTTGACAACCCTGAAAGTAATGATACTCATGAGGAAGTTGAAGGACACTCCATTTACATTCGAAATTTGCCCTTAAATGTGACGGTTGCTCAATTGGAAGTGGAGTTTAATAAATTTGGACCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGCTACTGTTTTGGCTTTGTCGAGTTCCTGTCTCTAAATTCAATGAATAGTGCAATTCAGGCTTCACCTGTTACTGTTGGGGGGCGTCAAGCTGTGGTTGAGATAAAGAGAACCACTGCCCGAGTTGGCAGTGGCCCGGGCGGTCCTGGAAGAGCTAGGTTTCCATCAGGAAGAAGTGGATTCCGAAATGACTCTTTCAGGGGTCGTGGGAATTATGGTGTTGGCCGGGGCTATGGTCGAAACGATTACGGAAGCAGGGGTGAGTTTTCCAGTAGGGGTCGTGGTCACAGCGGACATGGAGAAGGCTATCACCAAGGGAGAGGGAGAGGTGGCCGTTCTAGTTCTAGTGCAGTAAAACATAATGCTGCTTCCAACTAAATTACAGGATGACTTTTGGGAGGTTGTTCTAAGGCCTTTTTTTGTTTAGGTTACAAACATGGAAGTCTGCAGAATTTTATTGCCACCCTCAACCTTAGAAAGTTTCTCATGTTAGTTTTAATGCGTTTGCACAGTTGTAGTATTTAATTGTCATTGCTATGGTCTTTAGTGGTTTAGTAGTGATCAGGAATAGGTATAATCTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00748	26844	30488	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005622 intracellular

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000748s00025518.1	PF02136.15	NTF2	17	133	4.00E-29
Glyur000748s00025518.1	PF14259.1	RRM_6	291	357	3.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.874
SRR1783600	control	8.807
SRR1783602	moderate drought stress	5.844
SRR1811619	moderate drought stress	5.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.376
DRR006520	Root Summer glycyrrhizin high producing strain	11.238
DRR006521	Root Winter glycyrrhizin high producing strain	3.329
DRR006522	Root Winter glycyrrhizin high producing strain	3.064
DRR006523	Root Summer glycyrrhizin low producing strain	9.549
DRR006524	Root Summer glycyrrhizin low producing strain	9.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.725
SRR2868004	Drought Stress (root)	14.155
SRR2967015	Control (root)	15.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.938
SRR9715740	Leaf	2.811
SRR9715741	Leaf	3.704
SRR9715739	Root	4.420
SRR9715742	Root	5.962
SRR9715743	Root	5.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.816
SRR8749028	MeJA induced 9h	20.041
SRR8749029	MeJA induced 9h	21.287
SRR8749030	Uninduced	2.278
SRR8749031	Uninduced	1.052
SRR8749032	Uninduced	3.159

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.249
SRR8400027	Control - Root	16.488